View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_12 (Length: 437)
Name: NF20118_low_12
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 34666876 - 34667135
Alignment:
| Q |
1 |
cataataaagagcaaaagtgatgttcccaaatgtttataggtggtgagtgggaccaatggtagggaagtttatgctgtaaattgtgttggaaatcggaag |
100 |
Q |
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| T |
34666876 |
cataataaagagcaaaagcgatgttcccaaatgtttataggtggtgagtgggaccaatggtagggaagttaatgctgtaaattgtgttggaaataggaag |
34666975 |
T |
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| Q |
101 |
ctatagggaatgaaatagtactctagaagtgaatgtttgtttttctgtccctaaacaaagacctatacacagtgtacttataagtattaaataaatgaat |
200 |
Q |
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| T |
34666976 |
ctatagggaatgaaatagtactctagaagtgaatgtttgtttttctgtccctaatcaaagacctatacacagtgtacttataagtattaaataaatgaat |
34667075 |
T |
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| Q |
201 |
cactaatgtgcatttagatttgattggaagtgaaaactagacaagacaaacctgacaaca |
260 |
Q |
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| T |
34667076 |
cactaatgtgcatttagatttgattggaagtgaaaactagacaagacaaacctgacaaca |
34667135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 339 - 420
Target Start/End: Original strand, 34667219 - 34667300
Alignment:
| Q |
339 |
tctgataatcatcttcatgtatagttagatacataaataaggaaataaccttatagttagtttcaaatggaaatggcaatgt |
420 |
Q |
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| T |
34667219 |
tctgataatcatcttcatgtatagttagatacataaataaggaaataaccatatagttagtttcaaatggaaatggcaatgt |
34667300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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