View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_16 (Length: 429)
Name: NF20118_low_16
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 87 - 414
Target Start/End: Original strand, 35786327 - 35786654
Alignment:
| Q |
87 |
gaagaatggatcattataatcccataaactagttgtataatcttcctcacttgtcaaagctggccacatagaatttggagaaccaacacaatcacccact |
186 |
Q |
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| T |
35786327 |
gaagaatggatcattataatcccataaactagttgtataatcttcctcacttgtcaaagctggccacatagaatttggagaaccaacacaatcacccact |
35786426 |
T |
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| Q |
187 |
ggatccagatccactgttccatcaatatcattattattttgagaaccaaaaattgatgaccccacacaattttgaatattcatctgctgttgttgctgat |
286 |
Q |
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| T |
35786427 |
ggatccagatccactgttccatcaatatcattattattttgagaaccaaaatttgatgaccccacacaattctgaatattcatctgctgctgttgctgat |
35786526 |
T |
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| Q |
287 |
tcaaaacatgttgtgcatgttgttgattcaaaacattttgtgcatgttgttcttgatcatgatgatgactactatgaatattctgaccgtacgaggtaat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35786527 |
tcaaaacatgttgtgcatgttgttgattcaaaacattttgtgcatgttgttcttgatcatgatgatgactactatgaatattctgaccgtacgaagtaat |
35786626 |
T |
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| Q |
387 |
tgatttaacagaatcaccacttgcatgt |
414 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35786627 |
tgatttaacagaatcaccacttgcatgt |
35786654 |
T |
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