View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_18 (Length: 427)
Name: NF20118_low_18
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 10724533 - 10724719
Alignment:
| Q |
20 |
gtagacacaaagatctttcagtatatctttcagaaattgctgcacagaaaagtataatccgttagatgtaacacattactagttaaacacaggcacaact |
119 |
Q |
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| T |
10724533 |
gtagacacaaagatctttcagtatatctttcagaaattgctgcacagaaaagtataatccgttagatgtaacacattactagttaaacacaggcacaact |
10724632 |
T |
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| Q |
120 |
ggatatatacaaacaaatattcaataaccaagtatgtcatacagtaaggtatatacatatatgtataaactataatagccatcatca |
206 |
Q |
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| T |
10724633 |
ggatatatacaaacaaatattcaataaccaagtatgtcatacagtaaggtatatacatatatgtataaactataatagccatcatca |
10724719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 204 - 417
Target Start/End: Original strand, 10724770 - 10724981
Alignment:
| Q |
204 |
tcaattgcataaatataatcaaatgggtctatgagcattaaccatagattcatgttttacatatacttgaagcaattggagtctatgaaacactgacaca |
303 |
Q |
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| T |
10724770 |
tcaattgcataaatataatcaaatgggtctacgagcattaaccatagattcatgttt-acgtatacttgaagcaattggagtctatgaaacaccgagaca |
10724868 |
T |
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| Q |
304 |
aacatagatactcatatgttggcaccaacagtaatttgagaaaatgaaagtgatttatgtaacaacgatannnnnnnactgtcatgtcggcgacagacac |
403 |
Q |
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| T |
10724869 |
aacatagatactgatatgttgacaccaatagtaatttgagaaaatgaaagtgatttatgtaacaacgata-ttttttagtgtcatgtcggcgacggacac |
10724967 |
T |
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| Q |
404 |
caaacacacctttg |
417 |
Q |
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| T |
10724968 |
tgaacacacctttg |
10724981 |
T |
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