View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_2 (Length: 626)
Name: NF20118_low_2
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 39 - 608
Target Start/End: Original strand, 27112530 - 27113098
Alignment:
| Q |
39 |
cgtaattattgaatcaataatttgagtaaaagttagttgcatgaattctatttatagaactagctatctaacaagttaacttgtctagcaatagttaact |
138 |
Q |
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| T |
27112530 |
cgtaattattgaatcaataatttgagtaaaagttagttacatgaattctatttatagagctagctatccaacaagttaacttgtctagcaatagttaact |
27112629 |
T |
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| Q |
139 |
gtcgtaactaactgtaactataatctagtgtaactgtgactctatgaacttgatgagatgtcaatatgacttgctataacggtgaaggatgggaatcact |
238 |
Q |
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| T |
27112630 |
gtcgtaactaactgtaactataatctagtgtaattgtgactctatgaacttgatgagctgtcaatatgacttgctataacggtgaaggatgggaatcgat |
27112729 |
T |
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| Q |
239 |
tgtattaacatcatcctctattaatcgcagttcaaaacagtaaatttaattgnnnnnnnatactttcacttcaaaatgtgtcaataac-ttttgttttct |
337 |
Q |
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| T |
27112730 |
tgtattaacaagatcctctattaatcgcagttcaaaacagtaaatttaattgtttttttttactttcacttcaaaatgtgtcaataacttttttttttct |
27112829 |
T |
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| Q |
338 |
tatgcacgcaaagaaagaagggaggtggaggatatatagcacttagggcatgataatggaagtgaatgacttcaatgcgaaaacaagaggagtgtgtttg |
437 |
Q |
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| T |
27112830 |
tatgcacgcaaaggaagaagggaggtggaggatatatagcacttagggcatgataatggaagtgaatgacttcaatgcgaaaacaagaggagtgtgtttg |
27112929 |
T |
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| Q |
438 |
tcatttnnnnnnntctcgggtaggtcattgcaattccatcnnnnnnnaatgaaatacatatggttattatcgagagagcatgtgatgatttcaaaataaa |
537 |
Q |
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|||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27112930 |
tcatttaaataaatctcgggtaggtcattgcaattccccctttttttaatgaaatgcatatggttattatcgagagagcatgtgatgatttcaaaataaa |
27113029 |
T |
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| Q |
538 |
tcaatgcgaaaatgatacgatattgaaaaatagagtaggagagcacatcaacaattaagtgaatgattgtg |
608 |
Q |
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| T |
27113030 |
tcaatgcgaaaatgatacgatattgaaaaatagagaaggagagcacatcaaca--caagtgaatgattgtg |
27113098 |
T |
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