View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20118_low_20 (Length: 418)
Name: NF20118_low_20
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 983156 - 982754
Alignment:
| Q |
1 |
agttactgattcatcgtaatgaatcaagcttcatcatagtaaatagggttttaacatagtgaataaaaattgatttattttcattgagatttaaatggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
983156 |
agttactgattcatcgtaatgaatcaagcttcatcatagtaaatagggttttaacatagtgaataaaaattgatttattttcattgagatttaaatggaa |
983057 |
T |
|
| Q |
101 |
ctgattttgtataaatttgtagcattgttctgatgttatatatgattacattgcaggcttgcaactgcaaggaagatagtttatttagttttgatttgaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
983056 |
ctgattttgtataaatttgtagcattgttctgatgttatatatgattacattgcaggcttgcaactgcaaggaagatagtttatttagttttgatttgaa |
982957 |
T |
|
| Q |
201 |
tagtgatggtgatggatatgtgtatgtactccttacctttgcactatcgacatttctaatcgaaggcatgtacagtgatatatgtgattacattaaatta |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
982956 |
tagtgatggtgatggatatgtgtatgtactccttacctttgcactatcgacatttctaatcgaaggcgtgttcagtgatatatgtgattacattaaatta |
982857 |
T |
|
| Q |
301 |
gttaattttttgaatttattatcagtgtcaacgtgtaagtatcgtatacaatgtatatgtgtcagtgcttcgtagtttcttacacatccatgcacattgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
982856 |
gttaattttttgaatttattatcagtgtcaacgtgtaagtatcgtgtacaatgtatatgtgtcggtgcttcgtagtttcttacacatccatgcacattgt |
982757 |
T |
|
| Q |
401 |
taa |
403 |
Q |
| |
|
||| |
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|
| T |
982756 |
taa |
982754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 15969400 - 15969346
Alignment:
| Q |
282 |
atgtgattacattaaattagttaattttttgaatttattatcagtgtcaacgtgt |
336 |
Q |
| |
|
||||||||||||||||||| | ||||||| || |||||||||||||| |||||| |
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|
| T |
15969400 |
atgtgattacattaaattatgttattttttaaaattattatcagtgtcgacgtgt |
15969346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 44089279 - 44089230
Alignment:
| Q |
287 |
attacattaaattagttaattttttgaatttattatcagtgtcaacgtgt |
336 |
Q |
| |
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|||||||||||||| |||||| ||| || ||||||||| ||||||||||| |
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|
| T |
44089279 |
attacattaaattatttaattgttttaaattattatcaatgtcaacgtgt |
44089230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 31523721 - 31523765
Alignment:
| Q |
284 |
gtgattacattaaattagttaattttttgaatttattatcagtgt |
328 |
Q |
| |
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||||||||||| ||||| |||||||||| ||||| |||||||||| |
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|
| T |
31523721 |
gtgattacattcaattaattaattttttaaattttttatcagtgt |
31523765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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