View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_21 (Length: 414)
Name: NF20118_low_21
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_21 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 13409658 - 13409237
Alignment:
| Q |
1 |
acaagagataataatgtatacgaacacgtcaatttcgataataatttgaaaaaatgaattaatagaacttagttacacgtgttggtgttgtgactcagag |
100 |
Q |
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| T |
13409658 |
acaagagataataata-atagtaacacatcaatatcgataataatttgaaaaaataaattaatagaacttagttacacgtgttggtgttg--actcagag |
13409562 |
T |
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| Q |
101 |
gcaaacacgagacatacttttgattagaagtgtcggtgctaacgacggtctaatggttatgcatggaggactatgatcttgcaacattat---tgtatta |
197 |
Q |
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| T |
13409561 |
gcaaacacaagacatacttttgattagaagtgtcggtgcttacgacggtctaatggttatgcatggaggactatgatcttgcaacattattcatgtatta |
13409462 |
T |
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| Q |
198 |
tgagtagcttaataaaaaagac--aagtaaaattcaaa------atgattattaaattgtatgttgagtttaatatagaacaattgatttagtttgtttt |
289 |
Q |
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| T |
13409461 |
tgagtagcttaataaaaaagacaaaagtaaaattcaaaataattattattattaaattgtatgttgagtttaatatagaacaattgatttagtttgtttt |
13409362 |
T |
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| Q |
290 |
gatttagttagtatggaaagataaggtattgaattatgacaaaatgtttagattgaagnnnnnnnntgtgaaaaatgaagtatgttttatgcatgcagta |
389 |
Q |
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| T |
13409361 |
gatttagttagtatggaaagataaggtattgaattatgacaaaatgtttagattgaagaaaaaaaatgtgaaaaatgaagtatgttttatgcatgcagta |
13409262 |
T |
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| Q |
390 |
taatatggaaatgatatgcacctgc |
414 |
Q |
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| T |
13409261 |
taacattgaaatgatatgcacctgc |
13409237 |
T |
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