View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_22 (Length: 414)
Name: NF20118_low_22
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Original strand, 39677779 - 39678169
Alignment:
| Q |
11 |
taatactatacactttttaaaatgaaattatatgattgactaactttctcaatgtgactttagcttataaattatttcggatgcagtcctcttgtgtcgt |
110 |
Q |
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| T |
39677779 |
taatactatacactttttaaaatgaaattatatgattgactaaatttctcaatgtgactttagcttataaattatttcggatggagtcctcttgtgtcgt |
39677878 |
T |
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| Q |
111 |
aatgcaggcagatgccttgatagaacaatgacggtgacatgtgagtccaccgtaaccacaggaaaaatgagtaacatttcnnnnnnnggtcatatcaagc |
210 |
Q |
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| T |
39677879 |
aatgcaggcagatgccttgataaaacaatgatggtgacatgtgagtccaccgtaaccacaggaaaaatgagtaacatttctttttttggtcatatcaagc |
39677978 |
T |
|
| Q |
211 |
atcaagtaaacttatctcaactattataaccaccattttaggtccaacatatatactgttctgctttcagttgtacactagagtggtatataattgccca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677979 |
atcaagtaaacttatctcaactattataaccaccattttaggtccaacatatatactgttctgctttcagttgtacactagagtggtatataattgccca |
39678078 |
T |
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| Q |
311 |
aaaagaatgaaccaaatgaattgagcaattgttctcatcctcgctgacgtgagctaatttgtagccattatcgatcactattgaagtttgt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39678079 |
aaaagaatgaaccaaatgaattgagcaattgttctcatcctcggtgacgtgagctaatttgtagccattatcgatcactattgaagtttgt |
39678169 |
T |
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