View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20118_low_24 (Length: 401)
Name: NF20118_low_24
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 1687592 - 1687208
Alignment:
| Q |
1 |
cttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgttcatctttctcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1687592 |
cttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgttcatctttctcatc |
1687493 |
T |
|
| Q |
101 |
atgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacgtcgactttcaacaatggccgttcataaagaactaattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1687492 |
atgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacattgactttcaacaatggccgttcataaagaactaattct |
1687393 |
T |
|
| Q |
201 |
cctgattttttacggacatttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttcatttttcggctgattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1687392 |
cctgattttttacggacatttctcttatttgcctttcgatgtatttttttatttgaggaaataatcttcttgattatagttttcatttttcggctgattg |
1687293 |
T |
|
| Q |
301 |
tagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagg |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1687292 |
tagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagg |
1687208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 53 - 367
Target Start/End: Complemental strand, 41918661 - 41918350
Alignment:
| Q |
53 |
ttttcttatctcctcccaatacctcctcttatgttcatctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtca |
152 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
41918661 |
ttttcttatcatctcccaatacctcctcttatgttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtca |
41918562 |
T |
|
| Q |
153 |
aactttacgtcgactttcaacaatggccgttcataaagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnnnnat |
252 |
Q |
| |
|
| | |||| || |||| |||| || | ||||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||| | | |
|
|
| T |
41918561 |
agcattacttcaacttctgctgatggtcgattataaagaactaattcccctgactttttgcggacatctctcttatttttctttcgatgcatttttttct |
41918462 |
T |
|
| Q |
253 |
tcgaggaaataatcttcttgattatagttttcatttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaat |
352 |
Q |
| |
|
|| |||||||||| |||||||||| || | |||||||||||||| || ||||||||||||||| | | || | | |||||||||| |||||| ||| |
|
|
| T |
41918461 |
tcaaggaaataattttcttgattaaagatctcatttttcggctg---gttgtagaatttccttctgcccaaaattgtgtccaacattttctcttcgtaac |
41918365 |
T |
|
| Q |
353 |
aaaagtttttgatct |
367 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
41918364 |
aaaactttttgatct |
41918350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University