View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_28 (Length: 369)
Name: NF20118_low_28
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 2792884 - 2792543
Alignment:
| Q |
20 |
cagttttaacaaaattggtcattcaaattgtacttgaaatagaaactgttcttaggaaccaaagaatacgagaaagagaatatgaatgaaagaatataag |
119 |
Q |
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| T |
2792884 |
cagttttaacaaaattggtcattcaaattgtacttgaaatagaaactgttcttaggaaccaaagaatacgagaaagagaatatgaatgaatgaatataag |
2792785 |
T |
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| Q |
120 |
gcacttgcattatgatttctgatgtcatacaaatagttttggttataattttgctaacaaaataaagatgatcatatatataaaatcatgcaatagttgt |
219 |
Q |
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| T |
2792784 |
gcatttgcattatgatttctgatgtcatacaaatagttttggttttaattttgttaacaaaataaagatgatcatatatataaaatcatgcaatagttgt |
2792685 |
T |
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| Q |
220 |
tatatagatccaaaatttgcatgcttttcttacctcttcatatcttaaacattaccctcctttcactactttaaaacttacctttcatttcaatgcacat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2792684 |
tatatagatccaaaatttgcatgcttttcttacctcttcatatcttaaacattaccctcctttcactactttaaaacttacctttcatttcaatgcacat |
2792585 |
T |
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| Q |
320 |
tgcatcactattacataattcactcactaactctttcttctc |
361 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2792584 |
tgcatcactattacataattcattcactaactctttcttctc |
2792543 |
T |
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