View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20118_low_29 (Length: 361)

Name: NF20118_low_29
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20118_low_29
NF20118_low_29
[»] chr2 (2 HSPs)
chr2 (113-356)||(31454239-31454488)
chr2 (18-47)||(31454141-31454170)
[»] chr7 (1 HSPs)
chr7 (206-252)||(35710309-35710355)
[»] chr5 (1 HSPs)
chr5 (206-252)||(75364-75410)
[»] chr4 (1 HSPs)
chr4 (208-252)||(41361697-41361741)
[»] chr3 (1 HSPs)
chr3 (206-251)||(20510984-20511029)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 113 - 356
Target Start/End: Original strand, 31454239 - 31454488
Alignment:
Q  113 aacttccgaaactgtcatgaaaatttaaactgnnnnnnnnnctttcacatatatatgaaagtaaaaccaattttttcacatagttctaacctttgtcata 212  Q
    |||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31454239 aacttccgaaactgtcatgaaactttaaactgttttttttt-tttcacatatatatgaaagtaaaaccaattttttcacatagttctaacctttgtcata 31454337  T
Q  213 acttgtactatgatagattgaaatatatgatcaaatacag-------nnnnnnnnnnccctttagggtaggttaagatttttcagtggccatgaatttat 305  Q
    ||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||| ||||    
T  31454338 acttgtactatgatagattgaaatatatgatcaaatacagtttttttttttttttttccctttagggtaggttaagatttttcagtggccatgaaattat 31454437  T
Q  306 aggttttgtttgtgttaaatgagtgtgtttgttaagtgtcttcatctcact 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31454438 aggttttgtttgtgttaaatgagtgtgtttgttaagtgtcttcatgtcact 31454488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 31454141 - 31454170
Alignment:
Q  18 atcattaccacaagatgaaggtacccttca 47  Q
    ||||||||||||||||||||||||||||||    
T  31454141 atcattaccacaagatgaaggtacccttca 31454170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 35710309 - 35710355
Alignment:
Q  206 tgtcataacttgtactatgatagattgaaatatatgatcaaatacag 252  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||||    
T  35710309 tgtcataacttgtactataatagattgacatatacgatcaaatacag 35710355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 75364 - 75410
Alignment:
Q  206 tgtcataacttgtactatgatagattgaaatatatgatcaaatacag 252  Q
    |||||||||||||||||| ||||||||| || |||||||||||||||    
T  75364 tgtcataacttgtactataatagattgacatgtatgatcaaatacag 75410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 41361697 - 41361741
Alignment:
Q  208 tcataacttgtactatgatagattgaaatatatgatcaaatacag 252  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||    
T  41361697 tcataacttgtactataatagattgacatatacgatcaaatacag 41361741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 20510984 - 20511029
Alignment:
Q  206 tgtcataacttgtactatgatagattgaaatatatgatcaaataca 251  Q
    |||||||||||||||||| ||| ||||| ||||| |||||||||||    
T  20510984 tgtcataacttgtactataatatattgacatatacgatcaaataca 20511029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University