View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_30 (Length: 339)
Name: NF20118_low_30
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 5387549 - 5387862
Alignment:
| Q |
11 |
caaaggaaaagcagagttggactactctgacatcttgtttataaggtcaaatattatacattagttcattttattcctcttttgcgacaataatatttct |
110 |
Q |
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| T |
5387549 |
caaaggaaaagcagagttggactactctgacatcttgtttataaggtcaaatattatacattagttcattttattcctcttttgcgacaataatatttct |
5387648 |
T |
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| Q |
111 |
agaacgtaacaacaaatacacacctcacagctacatgggggttcatacggatcatctatccctgtgaaacctgcagatttccaaatagataattcactac |
210 |
Q |
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| T |
5387649 |
agaacgtaacaacaaatacacacctcacagctacatgggggttcatacggatcatctatccctgtgaaacctgcagatttccaaatagataattcactac |
5387748 |
T |
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| Q |
211 |
tggtgcacagatcaatctggattaaaaagataaatagacataattcataaagctaaactgctgaagctaatgtatttaaataacaacctagcataaacat |
310 |
Q |
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| T |
5387749 |
tggtgcacagatcaatctggattaaaaagataaatagacataattcataaagctaaactgctgaagctaatgtatttaaataacaacccagcataaacat |
5387848 |
T |
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| Q |
311 |
aatttgaacataat |
324 |
Q |
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| T |
5387849 |
aatttgaacataat |
5387862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 39965098 - 39965040
Alignment:
| Q |
124 |
aaatacacacctcacagctacatgggggttcatacggatcatctatccctgtgaaacct |
182 |
Q |
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| T |
39965098 |
aaatacaaacctcacagcaacaaggtggttcatatggatcatctataccagtgaaacct |
39965040 |
T |
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