View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_32 (Length: 332)
Name: NF20118_low_32
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 13408947 - 13409151
Alignment:
| Q |
18 |
aactataacaccagattgctgcgggccagatgattcaacttatttttcattcatttcttgatcacaaaacattattgtttgcacatattcatcacttggt |
117 |
Q |
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| T |
13408947 |
aactataacaccagacagctgcgggctagatgattcaagttatttttcattcatttcttgatcacaaaacattattatttgcacatattcatcacttggt |
13409046 |
T |
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| Q |
118 |
ttatatgtgttgaagcttgatgtttcattgtttttatcgtttgattcttagttttatctaaagccaaaaatggtgaacaccattattagcattattttaa |
217 |
Q |
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| T |
13409047 |
ttatatgtgttgaagcttgatgtttcatt---------gtttgattcttagttttatctaaagccaaaaatggtgaacaccattattagcattattttaa |
13409137 |
T |
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| Q |
218 |
acttatctagctaa |
231 |
Q |
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| T |
13409138 |
acttatctagctaa |
13409151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 13409183 - 13409254
Alignment:
| Q |
239 |
gttaaaaaaccatgcacaatgaatctgtattaacgattcactattcacctcttatcttgtgcaggtgcatatcatttc |
316 |
Q |
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| T |
13409183 |
gttaaaaaaccatgcacaatgaat------taaggattcactattcacctcttatcttgtgcaggtgcatatcatttc |
13409254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 13408814 - 13408868
Alignment:
| Q |
45 |
agatgattcaacttatttt-tcattcatttcttgatcacaaaacattattgtttg |
98 |
Q |
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| T |
13408814 |
agatgatttaacttattttttcattcatttcttgatcacaaaacattattgtttg |
13408868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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