View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20118_low_34 (Length: 326)
Name: NF20118_low_34
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 41430949 - 41431262
Alignment:
| Q |
1 |
gttacagagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41430949 |
gttacagagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaaaactagttaaatccatatgtacatgtgaaggat |
41431048 |
T |
|
| Q |
101 |
caattgttaatctcactcggaacatattctcaatgacacatgagataacatcaagaacagttttcggcaaaaggaccaaacaccaacaagtgtttataac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41431049 |
caattgttaatctcactcggaacatattctcaatgacacatgagataacatcaagaacagttttcggcaaaaggaccaaacaccaacaagtgtttataac |
41431148 |
T |
|
| Q |
201 |
tgcaatggtggaaatagtaagtttgttgggagattttgtattgctgatctgtatccttctgttagaatattgcttcagagtgtgagtaacgcaaagacta |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41431149 |
tgcaatggaggaaatagtaagtttgttgggagattttgtattgctgatctgtatccttctgttagaatattgcttcagagtgtgagtaacgcaaagactg |
41431248 |
T |
|
| Q |
301 |
gacgtgaaaaactt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
41431249 |
gacgtgaaaaactt |
41431262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41327985 - 41328134
Alignment:
| Q |
1 |
gttacagagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggat |
100 |
Q |
| |
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|||| ||||||||||||| |||| |||| || |||||| ||||||||||||||| ||||| |||| || |||||||| ||| | || ||||||||| |
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| T |
41327985 |
gttatagagctattaagtgcaaagcgtgtacaatcatttaggtccataagagaagatgaggtgtcaaaccttgttaaatcaataactgcaagtgaaggat |
41328084 |
T |
|
| Q |
101 |
caattgttaatctcactcggaacatattctcaatgacacatgagataaca |
150 |
Q |
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|| ||||||||||||||||||| || |||||||||||| ||| ||||||| |
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| T |
41328085 |
cagttgttaatctcactcggaagattttctcaatgacaaatgggataaca |
41328134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 41324092 - 41324347
Alignment:
| Q |
6 |
agagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggatcaatt |
105 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||| ||||| ||||||||| || || |||| || | || ||| ||| | || |||||||||||||| |
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| T |
41324092 |
agagctattaagtgcaaagcgtgtccaatcatttaggtccacaagagaagatgaagtatcaaatcttgctacatcaataactgcaagtgaaggatcaatt |
41324191 |
T |
|
| Q |
106 |
gttaatctcactcggaacatattctcaatgacacatgagataacatcaagaacagttttcggcaaaaggaccaaacaccaacaagtgtttataactgcaa |
205 |
Q |
| |
|
||||||||||||| || || |||||||||||| ||| ||||||| | | | | ||| |||||||||| ||||||||| ||| ||||| | | ||| |
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| T |
41324192 |
gttaatctcactcataagattttctcaatgacatatgggataacaacgcgggcggcttttggcaaaaggagcaaacaccagcaatcgtttaaatcagcag |
41324291 |
T |
|
| Q |
206 |
tggtggaaatagtaagtttgttggga-gattttgtattgctgatctgtatccttct |
260 |
Q |
| |
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| | |||||||||||||||||||||| | ||||||||| |||| ||||||||||| |
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| T |
41324292 |
tagaggaaatagtaagtttgttgggaggcatttgtattgttgatttgtatccttct |
41324347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41331998 - 41332147
Alignment:
| Q |
1 |
gttacagagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggat |
100 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||| |||||| ||||||||||||||| || || ||| || |||||||| ||| | || ||||||||| |
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| T |
41331998 |
gttatagagctattaagtgcaaagcgtgtccaatcatttaggtccataagagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggat |
41332097 |
T |
|
| Q |
101 |
caattgttaatctcactcggaacatattctcaatgacacatgagataaca |
150 |
Q |
| |
|
| |||| |||||||||||||| || |||||||||||| ||| ||||||| |
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|
| T |
41332098 |
cggttgtaaatctcactcggaagattttctcaatgacaaatgggataaca |
41332147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 41316018 - 41316249
Alignment:
| Q |
1 |
gttacagagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggat |
100 |
Q |
| |
|
|||| ||| |||||||| |||| ||||||| |||||| ||| ||||||||||| || || ||| || |||||||| ||| | || ||||||||| |
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| T |
41316018 |
gttatagaactattaagcgcaaagcgtgtccaatcatttaggtctataagagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggat |
41316117 |
T |
|
| Q |
101 |
caattgttaatctcactcggaacatattctcaatgacacatgagataacatcaagaacagttttcggcaaaaggaccaaacaccaacaagtgtttataac |
200 |
Q |
| |
|
|| ||||||||||||||| ||| || || |||| |||| ||| ||||||| | || | | ||| || ||||||| |||||||||| ||||||||| | | |
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| T |
41316118 |
cagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatc |
41316217 |
T |
|
| Q |
201 |
tgcaatggtggaaatagtaagtttgttgggag |
232 |
Q |
| |
|
||||| | |||| ||| |||||||||||||| |
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|
| T |
41316218 |
agcaatagaggaagtagcaagtttgttgggag |
41316249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 41369576 - 41369685
Alignment:
| Q |
6 |
agagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggatcaatt |
105 |
Q |
| |
|
||||||||||| | |||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||| ||| |||||| || | || |
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| T |
41369576 |
agagctattaaatgcaaagcgtgtccaatcatttaggtccataagagaagaagaggtttcatcactagttaaatcaatatctactggtgaagcattagtt |
41369675 |
T |
|
| Q |
106 |
gttaatctca |
115 |
Q |
| |
|
||| |||||| |
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|
| T |
41369676 |
gttgatctca |
41369685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 41366183 - 41366295
Alignment:
| Q |
6 |
agagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggatcaatt |
105 |
Q |
| |
|
||||||||||||| ||||| ||||| | |||||| |||||| |||||||||||||| |||| || |||||||| ||| | || |||||||||| || |
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|
| T |
41366183 |
agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcggtt |
41366282 |
T |
|
| Q |
106 |
gttaatctcactc |
118 |
Q |
| |
|
||||||||||||| |
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|
| T |
41366283 |
gttaatctcactc |
41366295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 31188828 - 31188759
Alignment:
| Q |
46 |
ataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggatcaattgttaatctca |
115 |
Q |
| |
|
||||||||||||||||| |||| || |||||||| |||| | || |||||||||||||||||||||||| |
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|
| T |
31188828 |
ataagagaagaagaggtgtcaaatcttgttaaatcaatatctgcaagtgaaggatcaattgttaatctca |
31188759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 31224950 - 31225052
Alignment:
| Q |
11 |
tattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggatcaattgttaa |
110 |
Q |
| |
|
|||||||| |||| ||||||| |||||| || ||||||||||||||||| |||| || ||| |||| |||| | || ||||||||||||||||||| |
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|
| T |
31224950 |
tattaagtgcaaagcgtgtccaatcatttaggtatataagagaagaagaggtgtcaaatcttgttgaatcaatatctgcaagtgaaggatcaattgttaa |
31225049 |
T |
|
| Q |
111 |
tct |
113 |
Q |
| |
|
||| |
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|
| T |
31225050 |
tct |
31225052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41359833 - 41359890
Alignment:
| Q |
1 |
gttacagagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaaga |
59 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |
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|
| T |
41359833 |
gttacagagctattaagtg-aaaatgtgtccaatcatttaggtccataagagaagaaga |
41359890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 31188654 - 31188609
Alignment:
| Q |
220 |
agtttgttgggaga-ttttgtattgctgatctgtatccttctgtta |
264 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
31188654 |
agtttgctgggagaattttgtattgctgatgtgtatccttctgtta |
31188609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 41336932 - 41337040
Alignment:
| Q |
6 |
agagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaagactagttaaatccatatgtacatgtgaaggatcaatt |
105 |
Q |
| |
|
||||||||||||| ||||| ||||||| || ||| | |||||||||||||||||| || || |||||||| |||| | || |||||||||||| |
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| T |
41336932 |
agagctattaagtgcaaaacgtgtccaatcttttagtttcataagagaagaagaggtgtccgatcttgttaaatcaatatctgcaaatgaaggatcaatc |
41337031 |
T |
|
| Q |
106 |
gttaatctc |
114 |
Q |
| |
|
||||||||| |
|
|
| T |
41337032 |
gttaatctc |
41337040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 17249400 - 17249301
Alignment:
| Q |
162 |
tttcggcaaaaggaccaaacaccaacaagtgtttataactgcaatggtggaaatagtaagtttgttggga-gattttgtattgctgatctgtatccttct |
260 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| | | | ||||| | ||||||||| |||||||||||| |||||||||||| |||| ||||||||||| |
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| T |
17249400 |
tttcgggaaaaggaacaaacaccaacaagtgttcaaatcagcaatagaggaaatagtgagtttgttgggaggattttgtattgttgatttgtatccttct |
17249301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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