View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_35 (Length: 321)
Name: NF20118_low_35
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 51845083 - 51844781
Alignment:
| Q |
1 |
gttatcgagatgtaactcaccgaggaaacgaagatttgttaatgagtctggtatatttcctgagaatttattattgttgagccatactttcttgagagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845083 |
gttatcgagatgtaactcaccgaggaaacgaagatttgttaatgagtctggtatatttcctgagaatttattattgttgagccatactttcttgagagaa |
51844984 |
T |
|
| Q |
101 |
cctaaatgagagaaaaaatctggaggaataggtcctgagaattggtttaatgataaataaagagctttaagagcaccaagtttgttgaattcaggaattg |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51844983 |
cctaaatgagaaaaaaaatctggaggaataggtcctgagaattggtttaatgataaataaagagctttaagagcaccaagtttgttgaattcaggaattg |
51844884 |
T |
|
| Q |
201 |
caccagagaaagagttgttaacaaaactaatggttcttaacgttggaatttgtaaaagagaatcaatgtcaatttttccagagaggcctaaatcagtaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51844883 |
caccagagaaagagttgttaacaaaactaatggttcttaacgttggaatttgtaaaagagaatcaatgtcaatttttccagagaggcctaaatcggtaag |
51844784 |
T |
|
| Q |
301 |
atg |
303 |
Q |
| |
|
||| |
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|
| T |
51844783 |
atg |
51844781 |
T |
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