View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_38 (Length: 293)
Name: NF20118_low_38
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 24529312 - 24529468
Alignment:
| Q |
17 |
agatactatatatatggcaaaactctaggatatcgaaatgttcaacaaacaaaaatagtgcaaaatataaaatgacacacataagagcagatgaaattcc |
116 |
Q |
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| T |
24529312 |
agatactttatatatggcaaaactctaggatatcgaaatgttcaacaaacaaaaatagtgcaaaatataaaatgacacacataagagcagatgaaattcc |
24529411 |
T |
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| Q |
117 |
ttattaaaatgaaaaatgctttcaattttttctaaacgaagtgataaatatcataga |
173 |
Q |
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| T |
24529412 |
ttattaaaatgaaaaatgctttcaattttttctaaacgaagtgataaatattataga |
24529468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 24529494 - 24529569
Alignment:
| Q |
218 |
acctatcaatataatacttgtttcaaacacaaccaaatcaactcatggagcaaagtaacaaacatcaatttctatt |
293 |
Q |
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| T |
24529494 |
acctatcaatacaatacttgtttcaaacacaaccaaatcaagtcatggagcaaagtaacaaacatcaatttctatt |
24529569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 24527319 - 24527406
Alignment:
| Q |
25 |
tatatatggcaaaactctaggatatcgaaatgttcaacaaacaaaaatagtgcaaaatataaaatgacacacataagagcagatgaaat |
113 |
Q |
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| T |
24527319 |
tatatatgacaaaactctaggatatcgaaatgttcaccaaatgaaaata-tgcaaaatataaaatcacacacataagaggagatcaaat |
24527406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 24528203 - 24528292
Alignment:
| Q |
125 |
atgaaaaatgctttcaattttttctaaacgaagtgataaatatcatagaatttcaccgacacaactatgagactatagatttgaatcaag |
214 |
Q |
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| T |
24528203 |
atgaaaaatgcttttaattttttctaaacgaagtgataaataccacaaaaactcaatgacacaactgtgagactatatatttgaatcaag |
24528292 |
T |
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