View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_4 (Length: 574)
Name: NF20118_low_4
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 18269529 - 18268969
Alignment:
| Q |
1 |
acaaccacgagcagtctctaacccgaatctcggtcggacttccaccaacaagaagttcaaagaaatgatcattcattcttctcgaatcacacagcaactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18269529 |
acaaccacgagcagtctctaacccgaatctcggtcggacttccaccaacaagaagttcaaagaaatgatcattcattcttctcgaatcacacaacaactg |
18269430 |
T |
|
| Q |
101 |
actaagcctatgcctcaaaccatccggcacaccctcaagcgaaacaatcccatccacattcttagcaagtatcctaatacaaagctcctgcaatgacgga |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18269429 |
actaagcctatgcctcaaaccatccggcacaccctcaagcgaaacaatcgcatccacattcttagcaagtatcctaatacaaagctcttgcaatgacgga |
18269330 |
T |
|
| Q |
201 |
acagttaactttccacctaacttctccaaatccgttttcggtttccactttatcttatcaatcaaattctcctgcacagtatcagaaccaaatggaatcc |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18269329 |
acagttaactttccacctaacttctccaaacccgttttcggtttccactttatcttatcaatcaaattctcctgcacagtatcagaaccaaatggaatcc |
18269230 |
T |
|
| Q |
301 |
atttcttctctcgatccctaatgattttcatcgcagttgaaaatggaccaggccaatcttcaacctcattcctctcttcttctcctccatttccctgcac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
18269229 |
atttcttctctcgatccctaatgattttcatcgcagttgaaaatggaccaggccaatcttcaacctcattcctctcttcttctactccattttcctgcac |
18269130 |
T |
|
| Q |
401 |
caaatcctcatcagcgctttcatcattcacaaaatgcgcgaaacgtgaagcattcactctcgctatatcacgaaatcgttccatattcctcctcacaccg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18269129 |
caaatcctcatcagcgctttcatcattcacaaaatgcgcgaaacgtgaagcattcactctcgctatatcacgaaatcgttccatattcctcctcacaccg |
18269030 |
T |
|
| Q |
501 |
cgttcctctcccacattattaatagcatttctagcttgttctacaacattcggtacttcat |
561 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
18269029 |
cgttcctctctcacattattaatagcatttctagcttcttctacaacattcggtacttcat |
18268969 |
T |
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