View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_40 (Length: 278)
Name: NF20118_low_40
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 24529953 - 24529690
Alignment:
| Q |
12 |
agagatgagcaagatagttggagacaaggagctgcaccaaaattatatagatgactttgttgattatgtggagctacatattcttacctctaagcattag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24529953 |
agagatgagcaagatagttggagacaaggagctgcaccaaaaatatatagatgactttgttgattatgtggagctacatattcttacctctaagcattag |
24529854 |
T |
|
| Q |
112 |
cactaattaggtctttatttcatcttgtgttttcatattatctatggtttagagtgatttaatgcaataatcttcaaagtcccttggaatttcgatgttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24529853 |
cactaattaggtctttatttcatcttgtgttttcatattatctatggtttagagtgatttaatgcaataatcttcaaagtccattggaatttcgatgttc |
24529754 |
T |
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| Q |
212 |
atttgcta-tttctttttgctatcatctaggatagactcaaagcattagcacaaaggttgtttt |
274 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
24529753 |
atttgctattttatttttgctatcatctaggatagactcaaagtattagcacaaaggttttttt |
24529690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 24543930 - 24544033
Alignment:
| Q |
12 |
agagatgagcaagatagttggagacaaggagctgcaccaaaattatatagatgactttgttgattatgtggagctacatattcttacctctaagcattag |
111 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||| | || ||||||||||| |
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| T |
24543930 |
agagatgagcaagatatttggagacaaggagctgcaccaaaagtatttggatgactttgttgattatatggagctccatatctctgccactaagcattag |
24544029 |
T |
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| Q |
112 |
cact |
115 |
Q |
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|||| |
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|
| T |
24544030 |
cact |
24544033 |
T |
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