View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_42 (Length: 252)
Name: NF20118_low_42
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_42 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 21180583 - 21180363
Alignment:
| Q |
22 |
tgggctgttttgctagtaatgtcggacatgggtctgttcttgaagcggaacttttgggtttgattttagctatggagtttgctgctagtaatcattggat |
121 |
Q |
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| T |
21180583 |
tgggctgttttgctagtaatgtcggacatgggtctgttcttgaagcgggacttttgggtttgattttagctatggagtttgctgctagtaatcattggat |
21180484 |
T |
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| Q |
122 |
tcgtttgtggattgaatgtgattcttctagtgttgtgcatgcctttaagaatccctctgttattcctatttctcttcgaaaccgttggcataattgtttg |
221 |
Q |
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| T |
21180483 |
tcgtttgtggattgaatgtgattcttctagtgttgtgcatgcctttaagaatccctctgttattcctatttctcttcgaaaccgttggcataattgtttg |
21180384 |
T |
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| Q |
222 |
caacacggtatgactgttctt |
242 |
Q |
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| T |
21180383 |
caacacggtatgactgttctt |
21180363 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 42067184 - 42067320
Alignment:
| Q |
33 |
gctagtaatgtcggacatgggtctgttcttgaagcggaacttttgggtttgattttagctatggagtttgctgctagtaatcattggattcgtttgtgga |
132 |
Q |
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| T |
42067184 |
gctagtaatgtgggtaatgggtctgtttttgaagcagagctgattggtttgattatggcgatggaatttgctgtctgtaatcattggccccgtttgtggc |
42067283 |
T |
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| Q |
133 |
ttgaatgtgattcttctagtgttgtgcatgcctttaa |
169 |
Q |
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| T |
42067284 |
tggaatgtgactcttctagtgttgtgcatgcttttaa |
42067320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 281893 - 282066
Alignment:
| Q |
61 |
ttgaagcggaacttttgggtttgattttagctatggagtttgctgctagtaatcattggattcgtttgtggattgaatgtgattcttctagtgttgtgca |
160 |
Q |
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|||| ||||||||||||||||||||||| || |||||||||||||||| || |||||| ||| |||||| ||||||||||||| ||||||| ||||| |
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| T |
281893 |
ttgacgcggaacttttgggtttgatttttgcaatggagtttgctgctaagcataattggaatcggttgtggcttgaatgtgattcgactagtgtggtgca |
281992 |
T |
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| Q |
161 |
tgcctttaagaatccctctgttattcctatttctcttcgaaaccgttggcataattgtttgcaacacggtatga |
234 |
Q |
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| T |
281993 |
tgctttcaagaacccagacgttgttcctattcgtctccgaaacaggtggcataattgttttcaacatggtatga |
282066 |
T |
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