View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_44 (Length: 250)
Name: NF20118_low_44
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27292405 - 27292168
Alignment:
| Q |
1 |
tcaagttatctcttacaggtgcagattcgccgccttccaaaaccagtaattgcaatggtactctccttatttactccaaatctcaattttttgtgcacaa |
100 |
Q |
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| T |
27292405 |
tcaagttatctcttacaggtgcagattcgccgccttccaaaaccagtaattgcaatggtactctccttatttactccaaatctcaattttttgtgcacaa |
27292306 |
T |
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| Q |
101 |
agccttcaacagctgcaaattatttgctaacattaacacaggttgcagggtatgctgttggaggagggcatatattgcatatggtttgtgatctaaccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27292305 |
agccttcaacagctgcaaattatttgctaacattaacacaggttgcagggtatgctgttggaggagggcatatattgcatatggtttgtgatctaaccat |
27292206 |
T |
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| Q |
201 |
tgcagcagataatgctatctttggccaaaccggtccta |
238 |
Q |
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| T |
27292205 |
tgcagcagataatgctatctttggccaaaccggtccta |
27292168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 26163066 - 26162823
Alignment:
| Q |
13 |
ttacaggtgcagattcgccgccttccaaaaccagtaattgcaatggtactctc----ctta------------tttactccaaatctcaattttttgtgc |
96 |
Q |
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||||||||||||||||||| |||||||||||||||||| | |||||||||||| |||| |||| || ||||||| |||||||||| |
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| T |
26163066 |
ttacaggtgcagattcgccaccttccaaaaccagtaatcgtaatggtactctcctagcttacttctgtgcacctttattcttaatctcacttttttgtgc |
26162967 |
T |
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| Q |
97 |
acaaagcctt--caacagctgcaaattatttgctaacattaacacaggttgcagggtatgctgttggaggagggcatatattgcatatggtttgtgatct |
194 |
Q |
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|||||||||| || ||||||||||||||||||||||||||| |||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
26162966 |
acaaagccttcacagcagctgcaaattatttgctaacattaaaacagatagcagggtatgctattggaggggggcatatattgcatatggtttgtgatct |
26162867 |
T |
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| Q |
195 |
aaccattgcagcagataatgctatctttggccaaaccggtccta |
238 |
Q |
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| T |
26162866 |
aaccattgcagcagataatgctacctctggccaaactggtccta |
26162823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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