View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_46 (Length: 240)
Name: NF20118_low_46
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29298074 - 29298315
Alignment:
| Q |
1 |
cttacttcttttactatggagataatcttgggaagattctcattattacttccaaatagctgttcatccgaactgatcaatgcacacagtttacaaattt |
100 |
Q |
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| T |
29298074 |
cttacttcttttactatggagataatcttgggaagattctcattattacttccaaatagctgttcatccgaactgatcaatgcacacagtttacaaattt |
29298173 |
T |
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| Q |
101 |
tgcttagcccaatgtatatatataacaaagga-------------------gaatataaagcaaaagtactgcaaaggagaattaagaacaatttaatac |
181 |
Q |
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| T |
29298174 |
tgcttagcccaatgtatatatgtaacaaagtagaatatatagtaataatttgaatataaagcaaaagtactgcaaaggagaattaagaacaatttaatac |
29298273 |
T |
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| Q |
182 |
cttcgtatcaaattagaaagcagtccatgtgcatatctagct |
223 |
Q |
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| T |
29298274 |
cttcgtatcaaattagaaagcagtccatgtgcatatctagct |
29298315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 29316336 - 29316444
Alignment:
| Q |
1 |
cttacttcttttactatggagataatcttgggaagattctcattattacttccaaatagctgttcatccgaactgatcaatgcacacagtttacaaattt |
100 |
Q |
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|||||||||||||| | || ||||||| ||||||||||||||||| | |||||||||| ||||||||||| |||||||| ||| |||| ||||| ||| |
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| T |
29316336 |
cttacttcttttacaaccgaaataatctcgggaagattctcattatcagttccaaataggtgttcatccgatctgatcaacgcatgcagtatacaacttt |
29316435 |
T |
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| Q |
101 |
tgcttagcc |
109 |
Q |
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||||||||| |
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| T |
29316436 |
tgcttagcc |
29316444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 29316499 - 29316563
Alignment:
| Q |
159 |
gagaattaagaacaatttaataccttcgtatcaaattagaaagcagtccatgtgcatatctagct |
223 |
Q |
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| T |
29316499 |
gagaattaagaacaatttaacacctttgtatcaatttagcaagcagtccatgtgcatatctagct |
29316563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29326727 - 29326803
Alignment:
| Q |
1 |
cttacttcttttactatggagataatcttgggaagattctcattattacttccaaatagctgttcatccgaactgat |
77 |
Q |
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|||||||||||||| | || ||||||||||||||||||||||||| |||||||||||| |||||||| || ||||| |
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| T |
29326727 |
cttacttcttttacgaccgaaataatcttgggaagattctcattataacttccaaataggtgttcatctgacctgat |
29326803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 42285760 - 42285714
Alignment:
| Q |
22 |
ataatcttgggaagattctcattattacttccaaatagctgttcatc |
68 |
Q |
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|||||||||||||||||||||| || |||||||||||| |||||||| |
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| T |
42285760 |
ataatcttgggaagattctcatgataacttccaaataggtgttcatc |
42285714 |
T |
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