View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_48 (Length: 227)
Name: NF20118_low_48
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 51845299 - 51845073
Alignment:
| Q |
1 |
atcttgtccggatccatcgctaggtggtgacgttaaatccgaagaaggatcgcatgctttgtcaagtggcttcccacaaagctcttcatttcctgcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845299 |
atcttgtccggatccatcgctaggtggtgacgttaaatccgaagaaggatcgcatgctttgtcaagtggcttcccacaaagctcttcatttcctgcaaaa |
51845200 |
T |
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| Q |
101 |
gattttgcctcatacttggacaagggaccaggtattgcaccttgtaacttgttgttagacacgtctaaagatttaatatcttgtttgaattctggaatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51845199 |
gattttgcctcatacttggacaagggaccaggtattgcaccttgtaacttgttgttagacatgtctaaagatttaatatcttgtttgaattctggaatag |
51845100 |
T |
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| Q |
201 |
gaccagagaactcattgttatcgagat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
51845099 |
gaccagagaactcattgttatcgagat |
51845073 |
T |
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