View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20118_low_8 (Length: 477)
Name: NF20118_low_8
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 463
Target Start/End: Complemental strand, 41782118 - 41782060
Alignment:
| Q |
405 |
gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgataattat |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41782118 |
gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgacaattat |
41782060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 404 - 463
Target Start/End: Original strand, 40519525 - 40519584
Alignment:
| Q |
404 |
tgacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgataattat |
463 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| || ||||||| |||||||||| |||||| |
|
|
| T |
40519525 |
tgacaccctattacatttatataccagatggtcacatcaacaatttaatgtgacaattat |
40519584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 456
Target Start/End: Original strand, 18163561 - 18163613
Alignment:
| Q |
404 |
tgacaccctaatacatttatataccaaatggccatatcaacagtttaatgtga |
456 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
18163561 |
tgacaccctaataaatttatataccagatggccacatcaacaatttaatgtga |
18163613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University