View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_9 (Length: 457)
Name: NF20118_low_9
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 352 - 441
Target Start/End: Complemental strand, 6107022 - 6106933
Alignment:
| Q |
352 |
tttctgaaagccagattaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttgg |
441 |
Q |
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| T |
6107022 |
tttctgaaagtgagattaatcaattaaaacaattggttattgatttaaaatgtgaggaaaaagatattgcaaaacaacttcaatggttgg |
6106933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 364 - 441
Target Start/End: Complemental strand, 6181395 - 6181318
Alignment:
| Q |
364 |
agattaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttgg |
441 |
Q |
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| T |
6181395 |
agattaatcaattaaaacaattggttattgatttggaatgtgataaaaacgatattgcaaaacaactgcaatcgttgg |
6181318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 364 - 441
Target Start/End: Complemental strand, 6248216 - 6248139
Alignment:
| Q |
364 |
agattaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttgg |
441 |
Q |
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| T |
6248216 |
agattaatcaattaaaacaattggttattgatttggaacgtgatgaaaacgatattgcaaaacaactgcaatcgttgg |
6248139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 6238259 - 6238170
Alignment:
| Q |
260 |
tatataagatcagtaaacaatttaaacgcttaaatgattaagcttt----atctaacatgacaaacacaatggagcaggtgtgaacggta |
345 |
Q |
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| T |
6238259 |
tatataaaaccagtaaacaatttaaacacttaaatgattaagcttttattatgtaacatgacaaacacaatggagcaggtgtgaatggta |
6238170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 441
Target Start/End: Complemental strand, 6209062 - 6208886
Alignment:
| Q |
281 |
ttaaacgcttaaatgattaagcttt----atctaacatgacaaacacaatggagcaggtgtgaacggtacc------------agtgtttctgaaagcca |
364 |
Q |
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| T |
6209062 |
ttaaacacttaaatgattaagcttttattatgtaacatgacaaacacaatggagcaggtgtgaacggtagcgatggtaacagaagtgtttccaaaagtga |
6208963 |
T |
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| Q |
365 |
gattaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttgg |
441 |
Q |
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| T |
6208962 |
gattgatcaaataaaacaaatggttcttgatttagaatgcgaggaaaatgttattgcaaagcaacagcaatcgttgg |
6208886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 406
Target Start/End: Complemental strand, 6213837 - 6213676
Alignment:
| Q |
260 |
tatataagatcagtaaacaatttaaacgcttaaatgattaagct----ttatctaacatgacaaacacaatggagcaggtgtgaac---------ggtac |
346 |
Q |
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| T |
6213837 |
tatataaaaccagtaaacaatttaaacacttaaatgattaaacttttattatgtaacatgac-aacacaatggagcaggtgtgaacgttagcggtggtaa |
6213739 |
T |
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| Q |
347 |
cag---tgtttctgaaagccagattaatcaattaaaactattggttattgatttagaatgtga |
406 |
Q |
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| T |
6213738 |
cagaaatgtttatgaaagtgagaataatcaattaaaccaattggttattgatttagaatgtga |
6213676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 6238267 - 6238227
Alignment:
| Q |
132 |
ttatcccatatctaaaaccagtaaacaatttaaacacttaa |
172 |
Q |
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| T |
6238267 |
ttatcccatatataaaaccagtaaacaatttaaacacttaa |
6238227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 6089836 - 6089773
Alignment:
| Q |
367 |
ttaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaact |
430 |
Q |
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| T |
6089836 |
ttaatcacttaaaacaattggtttttgatctagaatgtgaggaaaattatattacaaaacaact |
6089773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 6213847 - 6213805
Alignment:
| Q |
130 |
tgttatcccatatctaaaaccagtaaacaatttaaacacttaa |
172 |
Q |
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| T |
6213847 |
tgttatctaatatataaaaccagtaaacaatttaaacacttaa |
6213805 |
T |
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