View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20119_high_6 (Length: 279)

Name: NF20119_high_6
Description: NF20119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20119_high_6
NF20119_high_6
[»] chr4 (13 HSPs)
chr4 (18-266)||(7770793-7771042)
chr4 (18-176)||(7789569-7789727)
chr4 (100-226)||(7238267-7238393)
chr4 (18-100)||(7238160-7238242)
chr4 (18-78)||(33134266-33134326)
chr4 (18-78)||(49041578-49041638)
chr4 (18-77)||(7877299-7877358)
chr4 (18-72)||(45372497-45372551)
chr4 (18-75)||(7800218-7800275)
chr4 (18-75)||(7813061-7813118)
chr4 (18-78)||(7822547-7822607)
chr4 (18-74)||(48735755-48735811)
chr4 (18-74)||(48862823-48862879)
[»] chr3 (3 HSPs)
chr3 (21-78)||(11015968-11016025)
chr3 (18-78)||(11006402-11006462)
chr3 (20-79)||(47452349-47452408)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 7771042 - 7770793
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatacaacactgtctttttctccatgctcactctactttgatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7771042 ataagagacttcaccggcaacctcatcagaatttggattattagttcatgaggcagatacaacactgtctttttctccatgctcactctactttgatcaa 7770943  T
Q  118 accctaattttacaaccttctaattttagcaaaccctaatttaaaaaaccggtgataatgtcattaaaccagaaaatgccgaaccggaaaaacccatcga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  7770942 accctaattttacaaccttctaattttagcaaaccctaatttaaaaaaccggtgataatgtcattaaaccagaacacgccgaaccggaaaaacccatcga 7770843  T
Q  218 accaactgg-nnnnnnnntgagcagaaaaaagattaagaacagagaagaa 266  Q
    |||||||||         ||||||||||||||||||||||||||||||||    
T  7770842 accaactggaaaaaaaaatgagcagaaaaaagattaagaacagagaagaa 7770793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 7789727 - 7789569
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatacaacactgtctttttctccatgctcactctactttgatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7789727 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatacaacactgtctttttctccatgctcactctgctttgatcaa 7789628  T
Q  118 accctaattttacaaccttctaattttagcaaaccctaatttaaaaaaccggtgataat 176  Q
    |||||||||||| ||||  || |||  || ||||  ||||||||||||||| |||||||    
T  7789627 accctaattttataaccaccttattcgagaaaacagtaatttaaaaaaccgttgataat 7789569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 7238267 - 7238393
Alignment:
Q  100 tcactctactttgatcaaaccctaattttacaaccttctaattttagcaaaccctaatttaaaaaaccggtgataatgtcattaaaccagaaaatgccga 199  Q
    ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||||  | ||    
T  7238267 tcactctactttgatcaaaccctaattttacaaccttcttattcaagcaaaccctaatttaaaaaaccagtgataatgtcattaaaccagaaaagactga 7238366  T
Q  200 accggaaaaacccatcgaaccaactgg 226  Q
    ||| |||||||||||| ||||||||||    
T  7238367 accagaaaaacccatcaaaccaactgg 7238393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 7238160 - 7238242
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatacaacactgtctttttctccatgct 100  Q
    |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||    
T  7238160 ataagagacttcactggcaacctcatcagaatttggatgattagttcatgaggcagatacaacagtgtctttgtctccatgct 7238242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 33134266 - 33134326
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagataca 78  Q
    ||||||||||||||||| || |||| ||||||  |||| |||| |||||||||||||||||    
T  33134266 ataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcagataca 33134326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 49041578 - 49041638
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagataca 78  Q
    |||||||||||||| ||||| ||||| |||||| |||| |||| |||||||| ||||||||    
T  49041578 ataagagacttcactggcaatctcattagaattaggatgatcaattcatgagacagataca 49041638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 7877358 - 7877299
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatac 77  Q
    ||||||||||||||| ||||||  ||||| |||||||| |||| ||||||||| ||||||    
T  7877358 ataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatac 7877299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 45372497 - 45372551
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggca 72  Q
    ||||||||||||||||||||||| |  |||||||| || |||| |||||||||||    
T  45372497 ataagagacttcaccggcaaccttagtagaatttgaatcatcaattcatgaggca 45372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7800275 - 7800218
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagat 75  Q
    |||||| |||||||||||||||||| ||  ||| |||||||||  |||||||||||||    
T  7800275 ataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7813118 - 7813061
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagat 75  Q
    |||||| |||||||||||||||||| ||  ||| |||||||||  |||||||||||||    
T  7813118 ataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 7822607 - 7822547
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagataca 78  Q
    |||||| |||||||||||||||||| ||  ||| |||||||||  | ||||||||||||||    
T  7822607 ataagatacttcaccggcaacctcaacaagattaggattatcaaatgatgaggcagataca 7822547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 48735755 - 48735811
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcaga 74  Q
    ||||||||||||||||| |||||||  |||||||| | |||||  ||||||||||||    
T  48735755 ataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgaggcaga 48735811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 48862879 - 48862823
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcaga 74  Q
    ||||||||||||||||| ||||| | ||| ||| |||| |||| |||||||||||||    
T  48862879 ataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 11015968 - 11016025
Alignment:
Q  21 agagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagataca 78  Q
    |||||||||||||| ||||||| ||  ||||| ||||||| |||||||||||||||||    
T  11015968 agagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagataca 11016025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 11006402 - 11006462
Alignment:
Q  18 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagataca 78  Q
    ||||| ||||||||||||||||||| ||  ||||| || |||| |||||||||||||||||    
T  11006402 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 11006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 47452349 - 47452408
Alignment:
Q  20 aagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatacaa 79  Q
    ||||||||||||||||||||||| ||  || |||||||||| |||| |||| ||||||||    
T  47452349 aagagacttcaccggcaacctcaccaagatctggattatcaattcaagaggtagatacaa 47452408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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