View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20119_low_1 (Length: 498)
Name: NF20119_low_1
Description: NF20119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20119_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 240 - 498
Target Start/End: Complemental strand, 45070921 - 45070664
Alignment:
| Q |
240 |
gctgtctagaattggaaaagcttattcatcatttaatcatacttatgtttcatatggctcttgtaattattttgaaagcattgattatcaatggatcaat |
339 |
Q |
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| T |
45070921 |
gctgtctagaattggaaaagcttattcatcatttaatcatacttatgtttcatatggctcttgtaattattttgaaagcattgattatctatggatcaat |
45070822 |
T |
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| Q |
340 |
gctctaatctagaagtgtcttactctgctactgttggactgttaatgctaagaacttgatcagaaagaacaactttcaacaaaaagtcattttcaactat |
439 |
Q |
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| T |
45070821 |
gctctaatctagaagtgtcttactctgctactgttggac-cacaatgctaagaacttgatcagaaagaacaactttcaacaaaaagtcattttcaactat |
45070723 |
T |
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| Q |
440 |
atatattgataacttgcactatttattttgacattaatattacaaaacactcaactctc |
498 |
Q |
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| T |
45070722 |
atatattgataacttgcactatttattttgacattaatattacaaaacactcaactctc |
45070664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 45071144 - 45070988
Alignment:
| Q |
17 |
aaaacattattcttactcatgattgaagatttgaaagacaa-taagaaataaaaacacctgctagtaaaggctataacgtcctttttaatgtgttaagtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45071144 |
aaaacattattcttactcatgattgaagatttgaaagacaaataagaaataaaaacacctgctaataaaggctataacgtcctttttaatgtgttaagtt |
45071045 |
T |
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| Q |
116 |
catacgcattgacaaagtggtaggtcctttaggctacatttgctgtttactaagacc |
172 |
Q |
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| T |
45071044 |
catacgcattgacaaagtggtaggtcctttaggctacatttgctgtttactaagacc |
45070988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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