View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20119_low_11 (Length: 272)
Name: NF20119_low_11
Description: NF20119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20119_low_11 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 7123429 - 7123174
Alignment:
| Q |
1 |
tgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaaggagcttgcaaaaattcgcggtactgatgatgttgatgccgagtttaat |
100 |
Q |
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| T |
7123429 |
tgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaaggagcttgcaaaaattcgcggtactgatgatgttgatgccgagtttaat |
7123330 |
T |
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| Q |
101 |
gatattgttgctgctagtgaagcctcggatcaagtgaaaaacccgtggaaaaccttgaacaagagaaaaaataggcccccgatggttttcgctataatga |
200 |
Q |
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| T |
7123329 |
gatattgttgctgctagtgaagcctcggatcaagtgaaaaacccgtggaaaaccttgaacaagagaaaaaataggcccccgatggttttcgctataatga |
7123230 |
T |
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| Q |
201 |
ttcctttcttccaacaattcactggattgaatgtgatcacattctacgctcctatt |
256 |
Q |
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| T |
7123229 |
ttcctttcttccaacaattcactggattgaatgtgatcacattctacgctcctatt |
7123174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 187251 - 186997
Alignment:
| Q |
1 |
tgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaaggagcttgcaaaaattcgcggtactgatgatgttgatgccgagtttaat |
100 |
Q |
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|||||| |||| ||| |||||| |||| ||||| || |||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
187251 |
tgattcgccaaactcgcttgttacacgtggtcgtcacgaagaagcaagaaaggagcttgtgaaaatccgcggtactgatgatgttgatgctgagtttaga |
187152 |
T |
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| Q |
101 |
gatattgttgctgctagtgaagcctcggatcaagtgaaaaacccgtggaaaaccttgaacaagagaaaaaataggcccccgatggttttcgctataatga |
200 |
Q |
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|||||||||||||||||||||||||||| | |||||||| |||| |||||||||||| | |||||||| ||||||| | | | |||||||| ||| ||| |
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| T |
187151 |
gatattgttgctgctagtgaagcctcggctaaagtgaaacacccttggaaaaccttgcaggagagaaaatataggccacagcttgttttcgccatattga |
187052 |
T |
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| Q |
201 |
ttcctttcttccaacaattcactggattgaatgtgatcacattctacgctcctat |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
187051 |
ttcctttcttccaacaattcactggattgaatgtgatcacattctatgctcctat |
186997 |
T |
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