View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20119_low_2 (Length: 382)
Name: NF20119_low_2
Description: NF20119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20119_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 135 - 382
Target Start/End: Complemental strand, 36003536 - 36003290
Alignment:
| Q |
135 |
ttctattattattgtccaataagaatggagnnnnnnngttgtcacccaaaattatttaaaattgaatgtcaaaatatctttcctctacttttatatatag |
234 |
Q |
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| T |
36003536 |
ttctattgttattgttcaataagaatggagaaaaaaagttgtcacccaaaattatttgaaattaaatgtcaaaatatcattcctctacttttatatatag |
36003437 |
T |
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| Q |
235 |
ctttctgttggtacaaacaccaaactatcccttctacttctacacttcacagtcccaatctcaaaaccttttttctttattgaagtgaacatgaggctaa |
334 |
Q |
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| T |
36003436 |
ctttctgttggtacaaacaccaaactatcccttctacttctacacttcacagtcccaatctcaaaaccttttttc-ttattgaagtgaacatgaggctaa |
36003338 |
T |
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| Q |
335 |
gttttatctttggagctcaaatctttttccttttctttctactttctt |
382 |
Q |
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| T |
36003337 |
gttttatctttggagctcaaatctttttccttttctttctactttctt |
36003290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 36003672 - 36003564
Alignment:
| Q |
10 |
agcagagaccattttgcttgcttgcatgtatgtacttttacgaggaatgatattttgacaat-atttttaataattttggtaataactctctctattata |
108 |
Q |
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| T |
36003672 |
agcagtgaccattttgcttgcttgcatgtatgtgc---tatgaagaatgatattttgacaatcatttttaacaattttggtgacaactttctctatcata |
36003576 |
T |
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| Q |
109 |
ttcttatcgtac |
120 |
Q |
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| T |
36003575 |
ttctcatcgtac |
36003564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 35414547 - 35414462
Alignment:
| Q |
136 |
tctattattattgtccaataagaatggagnnnnnnngttgtcacccaaaattatttaaaattgaatgtcaaaatatctttcctcta |
221 |
Q |
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| T |
35414547 |
tctattgttattgtccaataagaatagaggaaaaaagttgtcatccaaagttatttaaaattggatgtcaaaatatcattcctcta |
35414462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 36023219 - 36023258
Alignment:
| Q |
173 |
ttgtcacccaaaattatttaaaattgaatgtcaaaatatc |
212 |
Q |
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| T |
36023219 |
ttgtcacccaaaattatttaaaattgattgtcaaaatatc |
36023258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 10309812 - 10309769
Alignment:
| Q |
176 |
tcacccaaaattatttaaaattgaatgtcaaaatatctttcctc |
219 |
Q |
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| T |
10309812 |
tcacccaaaattgtttaaaattgattgtcaaaatatcattcctc |
10309769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 17117121 - 17117046
Alignment:
| Q |
144 |
tattgtccaataagaatggagnnnnnnngttgtcacccaaaattatttaaaattgaatgtcaaaatatctttcctc |
219 |
Q |
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| T |
17117121 |
tattgtccagtaagaatggaggaaaaaggttgtcacccaaaattgtctaaaattggttgtcaaaatatcattcctc |
17117046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 50886502 - 50886577
Alignment:
| Q |
144 |
tattgtccaataagaatggagnnnnnnngttgtcacccaaaattatttaaaattgaatgtcaaaatatctttcctc |
219 |
Q |
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| T |
50886502 |
tattgtccaataagaatggaggaaaaaggttgtcacccaaagttgtctaaaattggttgtcaaaatatcattcctc |
50886577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 44995881 - 44995955
Alignment:
| Q |
138 |
tattattattgtccaataagaatggagnnnnnnngttgtcacccaaaattatttaaaattgaatgtcaaaatatc |
212 |
Q |
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| T |
44995881 |
tattgttattgtccaattagaagggaggaaaaatgttgttacccaaaatcatttaaaattgattgtcaaaatatc |
44995955 |
T |
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