View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20119_low_3 (Length: 352)

Name: NF20119_low_3
Description: NF20119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20119_low_3
NF20119_low_3
[»] chr1 (7 HSPs)
chr1 (19-342)||(2608359-2608694)
chr1 (176-342)||(2592069-2592235)
chr1 (176-342)||(2578320-2578486)
chr1 (176-342)||(2599823-2599989)
chr1 (19-106)||(2592326-2592413)
chr1 (19-106)||(2600110-2600197)
chr1 (19-106)||(2578745-2578832)
[»] chr3 (2 HSPs)
chr3 (218-343)||(49331276-49331404)
chr3 (218-343)||(49329000-49329128)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 2608694 - 2608359
Alignment:
Q  19 caacaagcttagtgccctaattatattgttttctctccttgcttattcaacattttcacatgcttgtggttcatgcaaaccaactccatcacctaagcc- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2608694 caacaagcttagtgccctaattatattgttttctctccttgcttattcaacattttcacatgcttgtggttcatgcaaaccaactccatcacctaagcct 2608595  T
Q  118 -----------aaagcctagtcctccaccaccttcaccaacaccatgtcctccaacaccttcgacaacacctcctactccttcaacatcacaaaaatgtc 206  Q
               ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2608594 aagccaaagccaaagcctagtcctccaccaccttcatcaacaccatgtcctccaacaccttcaacaacacctcctactccttcaacatcacaaaaatgtc 2608495  T
Q  207 ctagtgacacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaagtgttgtgcattgcttca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2608494 ctagtgacacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaagtgttgtgcattgcttca 2608395  T
Q  307 aggtttggttgatttagatgcagcaatttgcctttg 342  Q
    ||||||||||||||||||||||||||||||||||||    
T  2608394 aggtttggttgatttagatgcagcaatttgcctttg 2608359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 2592235 - 2592069
Alignment:
Q  176 cctcctactccttcaacatcacaaaaatgtcctagtgacacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtc 275  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  2592235 cctccaactccttcaacatcacaaaaatgtcctagtgacacattaaagctaggtgtatgtgctgatgttctaggacttgttaatgttattgttggaagtc 2592136  T
Q  276 ctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcctttg 342  Q
    |||||||||||||||||||| ||||| |||||||||||| |||||| || |||||| |||| |||||    
T  2592135 ctgcttcaagcaagtgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttg 2592069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 2578486 - 2578320
Alignment:
Q  176 cctcctactccttcaacatcacaaaaatgtcctagtgacacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtc 275  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  2578486 cctcctactccttcaacagcacaaaaatgccctagtgacacattaaagctaggtgtatgtgctgatgttctaggacttgttaatgttattgttggaagtc 2578387  T
Q  276 ctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcctttg 342  Q
    ||||||||||||| |||||| ||||| |||||||||||| |||||| || |||||| |||| |||||    
T  2578386 ctgcttcaagcaactgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttg 2578320  T

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Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 2599989 - 2599823
Alignment:
Q  176 cctcctactccttcaacatcacaaaaatgtcctagtgacacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtc 275  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||    
T  2599989 cctcctactccttcaacagcacaaaaatgccctagtgacacattaaagctaggtgtatgtgctgatgttctaggacttgttaatgttattgttggaattc 2599890  T
Q  276 ctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcctttg 342  Q
    ||||||||||||| |||||| ||||| |||||||||||| |||||| || |||||| |||| |||||    
T  2599889 ctgcttcaagcaattgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttg 2599823  T

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Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 2592413 - 2592326
Alignment:
Q  19 caacaagcttagtgccctaattatattgttttctctccttgcttattcaacattttcacatgcttgtggttcatgcaaaccaactcca 106  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2592413 caacaagcttagtgcactaattatattattttctctcctttcttattcaacattttcacatgcttgtggttcatgcaaaccaactcca 2592326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 2600197 - 2600110
Alignment:
Q  19 caacaagcttagtgccctaattatattgttttctctccttgcttattcaacattttcacatgcttgtggttcatgcaaaccaactcca 106  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2600197 caacaagcatagtgcactaattatattattttctctccttgcttattcaacattttcaaatgcttgtggttcatgcaaaccaactcca 2600110  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 2578832 - 2578745
Alignment:
Q  19 caacaagcttagtgccctaattatattgttttctctccttgcttattcaacattttcacatgcttgtggttcatgcaaaccaactcca 106  Q
    ||||||||||||||| ||||||||| | ||||||||| ||||| |||||||||||||||||| ||| | |||||||||||||||||||    
T  2578832 caacaagcttagtgcactaattataatattttctctctttgctcattcaacattttcacatgattgcgcttcatgcaaaccaactcca 2578745  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 49331276 - 49331404
Alignment:
Q  218 ttaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtcctgcttca---agcaagtgttgtgcattgcttcaaggtttgg 314  Q
    |||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||   || || ||||||||| |  |  |||||||||    
T  49331276 ttaaagttaggggtttgtgctgatgttttaggactggttaatgttgttgttggaaatcctgcttcaggtagtaattgttgtgcaataatcaaaggtttgg 49331375  T
Q  315 ttgatttagatgcagcaatttgcctttgc 343  Q
     |||||| ||||| ||| |||| ||||||    
T  49331376 ctgatttggatgctgcactttgtctttgc 49331404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 49329000 - 49329128
Alignment:
Q  218 ttaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtcctgcttca---agcaagtgttgtgcattgcttcaaggtttgg 314  Q
    ||||||||||| |||||||||||| |||||||  | ||||||||| || |||||| |||| |||||   || || |||||||||||| || | |||||||    
T  49329000 ttaaagctaggggtttgtgctgatcttttagggttggttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttgg 49329099  T
Q  315 ttgatttagatgcagcaatttgcctttgc 343  Q
     |||||| || || ||| |||| ||||||    
T  49329100 ctgatttggaggctgcactttgtctttgc 49329128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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