View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20119_low_5 (Length: 328)
Name: NF20119_low_5
Description: NF20119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20119_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 25338197 - 25338508
Alignment:
| Q |
1 |
aagttgatgaggagattgtaaatacaacatggattgatgacaggtttgattttgactcagaagaatgcaacattgccaatggaaaatgggttttcaacca |
100 |
Q |
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| T |
25338197 |
aagttgatgaggagattgtaaatacaacatggattgatgacaggtttgattttgactcagaagaatgcaacattgccaatggaaaatgggtttttaacca |
25338296 |
T |
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| Q |
101 |
atcaataaagccaatctacactgacataacttgtccatatatagaaagacaattttcttgtataaaaaatggtagaacagattctgattatcaacattgg |
200 |
Q |
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| T |
25338297 |
atcaataaagccaatctacactgacataacttgtccatatatagaaagacaattttcttgtataaaaaatggtagaacagattctgattatcaacattgg |
25338396 |
T |
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| Q |
201 |
gagtggcagccagaagattgcaccttgccaaggtaatttccacactccaaagtccaaacatgttaattgtgatttcaagattttcaccttttgacattat |
300 |
Q |
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| T |
25338397 |
gagtggcagccagaagattgcaccttgccaaggtaatttccacactccaaagtccaaacatgttaattgtgatttcaaaattttcaccttttgacattat |
25338496 |
T |
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| Q |
301 |
aaatatagatat |
312 |
Q |
| |
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|||||||||||| |
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| T |
25338497 |
aaatatagatat |
25338508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 5230463 - 5230665
Alignment:
| Q |
28 |
catggattgatgacaggtttgattttgactcagaagaatgcaacattgccaatggaaaatgggttttcaaccaatcaataaagccaatctacactgacat |
127 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||| | || ||| ||||||||||| | ||| | || | |
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| T |
5230463 |
catggattgatgataggtttgattttgatccagaagaatgcaatgttgctaatggaaaatggatatttaacagttcaataaagcctttatactcagataa |
5230562 |
T |
|
| Q |
128 |
aacttgtccatatatagaaagacaattttcttgtataaaaaatggtagaacagattctgattatcaacattgggagtggcagccagaagattgcaccttg |
227 |
Q |
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| T |
5230563 |
aagctgtccatacatagataaacaattttcttgtgtcaagaatggaaggaatgattctgattatcttcattgggagtggcagccagaagattgtaccttg |
5230662 |
T |
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| Q |
228 |
cca |
230 |
Q |
| |
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||| |
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| T |
5230663 |
cca |
5230665 |
T |
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