View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20119_low_6 (Length: 315)
Name: NF20119_low_6
Description: NF20119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20119_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 33406534 - 33406241
Alignment:
| Q |
7 |
gaagcaaagggaaagaccatagtttcatcattggtgtagaatttagttccaatttgtgatgaagaagaatttggttgcttactagccttagctctatctt |
106 |
Q |
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| T |
33406534 |
gaagcaaaaggaaagaccatagtttcatcattggtgtagaatttagttccaatttgtgatgaagaagaatttggttgcttactagccttagctctatctt |
33406435 |
T |
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| Q |
107 |
tcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaatgtgcattcataagaacgtctttttccttgatcatatcc |
206 |
Q |
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| T |
33406434 |
tcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaatgtgcattcataagaacgtctttttccttgatcatatcc |
33406335 |
T |
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| Q |
207 |
atcatcaccttcttcacttgaataattcatgttactaaaacaaagtactagaatacaacttaatgagtttgaaaatatgtaatatatggaagag |
300 |
Q |
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| T |
33406334 |
atcatcaccttcttcacttgaataattcatgttactaaaacaaagtactagaatacaactttatgagtttgaaaatatgtaatatatggaagag |
33406241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 30956660 - 30956730
Alignment:
| Q |
97 |
gctctatctttcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaa |
167 |
Q |
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| T |
30956660 |
gctctatcttttctatgaatgttcatgtgtccacctaaagcttgagcagttgtgaaacctcttttgcaaaa |
30956730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 16708026 - 16708105
Alignment:
| Q |
103 |
tctttcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaatgtgcattcataaga |
182 |
Q |
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| T |
16708026 |
tctttcctatgaatattcatgtggcctcctaatgccctagcattagtgaaaccccttttgcaaaatgtgcaatcataaga |
16708105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 24223659 - 24223725
Alignment:
| Q |
101 |
tatctttcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaa |
167 |
Q |
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| T |
24223659 |
tatctttcctatgaatattcatgtgtccaccaagagcttgtgcattagagaatcctctcttgcaaaa |
24223725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 30726615 - 30726662
Alignment:
| Q |
93 |
cttagctctatctttcctatgaatattcatgtgaccacctaaagcttg |
140 |
Q |
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| T |
30726615 |
cttagctctatctcttctatgaacattcatgtgaccacctaaagcttg |
30726662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 23010892 - 23010962
Alignment:
| Q |
97 |
gctctatctttcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaa |
167 |
Q |
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| T |
23010892 |
gctctatctcttctatggatattcatgtggcctcctaatgcttgtgcattagagaatcctctcttgcaaaa |
23010962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 34522684 - 34522639
Alignment:
| Q |
95 |
tagctctatctttcctatgaatattcatgtgaccacctaaagcttg |
140 |
Q |
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| T |
34522684 |
tagctctatctctcctatgaatattcatgtgaccaccaagagcttg |
34522639 |
T |
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