View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2011_low_10 (Length: 311)
Name: NF2011_low_10
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 41532028 - 41532114
Alignment:
| Q |
150 |
catagtatgagaagttcacaacacatcatccttagaaatattttgtcacagtaagatcgttcgtgaaaaaatgagtgatagtataat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41532028 |
catagtatgagaagttcacaacacatcatccttagaaatattttgtcacagtaagattgttcgtgaaaaaatgagtgatagtataat |
41532114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41531902 - 41531946
Alignment:
| Q |
18 |
tgattttcataaaatatttccccgatttttggtcttgaaagcacc |
62 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41531902 |
tgattttcataaaatatttcaccgatttttggtcttgaaagcacc |
41531946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 37257235 - 37257179
Alignment:
| Q |
244 |
cctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37257235 |
cctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctct |
37257179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 37253101 - 37253049
Alignment:
| Q |
244 |
cctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccat |
296 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
37253101 |
cctgcttcatccgactctcccgctgtctctcctgctcttactccatcatccat |
37253049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 37237751 - 37237715
Alignment:
| Q |
272 |
ctcctgctgttactccatcatccatctctgctcctcc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37237751 |
ctcctgctgttactccatcatccatctctactcctcc |
37237715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University