View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_12 (Length: 277)
Name: NF2011_low_12
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 31785460 - 31785231
Alignment:
| Q |
29 |
agcaacaccttacataaacaaagaagacatttaatttaaatatcccaggataatcacacaaagcactagctgcaattacatattatacacaactgaaacc |
128 |
Q |
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| T |
31785460 |
agcaacaccttacataaacaaagaagacatttaatttaaatatcccaggataatcacacaaagcactagctgcaattacatattatacacaactgaaacc |
31785361 |
T |
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| Q |
129 |
tagacaaagaaacctaacaaaataatagggattaaagactaagatagtttcactatatatatgctacagctaaattacacattcaaaaagaaaagacaac |
228 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31785360 |
tagacaaagaaacccaacaaaataatagggattaaagactaagatagtttcact----atatgctacagctaaattatacattcaaaaagaaaagacaac |
31785265 |
T |
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| Q |
229 |
aatcatcgaagggtattcaatctaaaactatcct |
262 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
31785264 |
aatcaccgaagggtattcaatctaaaactatcct |
31785231 |
T |
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