View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2011_low_13 (Length: 253)
Name: NF2011_low_13
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_13 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 45063490 - 45063246
Alignment:
| Q |
9 |
caacaatatgtcagtttaaatttggcgagaaccatttctctacaaccttcttgctttcttctttaagcctcatagaaacattcacaaaactaaatagcta |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45063490 |
caacaatatgtcagttcaaatttggcgagaacaatttctctacaaccttcttgctttcttctttaagcctcgtagaaacattcacaaaactaaatagcta |
45063391 |
T |
|
| Q |
109 |
ggttacaattttccaattagagacattaaaacgtaaatgtctaaaccatatgtgtcattataactgttctaaatgagacaaccaccatcgttagtcaagc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45063390 |
ggttacaattttccaattagagacattaaaacgtaaatgtctaaaccacatgtgtcattataactgttctaaatgagacaaccaccatcgttagtcaagc |
45063291 |
T |
|
| Q |
209 |
atccatcaatatcagtgatgaggaaaagaacttggtaacctcttc |
253 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45063290 |
atccaccaatatcagtgatgaggaaaagaactgggtaacctcttc |
45063246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 3505103 - 3505067
Alignment:
| Q |
145 |
atgtctaaaccatatgtgtcattataactgttctaaa |
181 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
3505103 |
atgtctaacccatatgtgtcattataattgttctaaa |
3505067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University