View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_14 (Length: 251)
Name: NF2011_low_14
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31784897 - 31784667
Alignment:
| Q |
1 |
aaggttttggttctcagttgagacatgttcaaagttttcatcatctgtttgtttctgttcattctcttcagctggaagattctaatctaaaagccggttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31784897 |
aaggttttggttctcagttgagacatgttcaaagtttccatcatctgtctgtttctgttcattctcttcagctggaagattcaaatctaaaagccggttt |
31784798 |
T |
|
| Q |
101 |
gatgttgtatgcgcctttttagccgtatctgcaagtaaatagggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattag |
200 |
Q |
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||||||||||| ||| ||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31784797 |
gatgttgtatgtgcccttttagccgcatctgcgagtaaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattag |
31784698 |
T |
|
| Q |
201 |
gaatgacatttattgaattgttagctacacc |
231 |
Q |
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|||||| |||||||||||||||| |||||| |
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| T |
31784697 |
gaatgatgtttattgaattgttaggtacacc |
31784667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 19631618 - 19631706
Alignment:
| Q |
143 |
ggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacacc |
231 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19631618 |
ggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacacc |
19631706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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