View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_15 (Length: 249)
Name: NF2011_low_15
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 45063629 - 45063414
Alignment:
| Q |
13 |
aatatttttattaagcaaacaccatttttccagcttctcttttttaattagtcacctctgctctaatttagaaaacaataaaagtgataccttccaatta |
112 |
Q |
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| T |
45063629 |
aatatttttattaagcaaacaccatttttccagcttctcttttttaattag--------------------aaaacaataaaagtgataccttccaatta |
45063550 |
T |
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| Q |
113 |
cttctaattcgttggttggataagtagagaatataga--tcctcccataattattattaactcaacaatatgtcagtttaaatttggcgagaaccatttc |
210 |
Q |
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| T |
45063549 |
cttctaattcgttcgttggataagtagagaatatagagatcctcccataattatta---actcaacaatatgtcagttcaaatttggcgagaacaatttc |
45063453 |
T |
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| Q |
211 |
tctacaaccttcttgctttcttctttaagcctcatagaa |
249 |
Q |
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| T |
45063452 |
tctacaaccttcttgctttcttctttaagcctcgtagaa |
45063414 |
T |
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