View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_16 (Length: 207)
Name: NF2011_low_16
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 45063370 - 45063246
Alignment:
| Q |
83 |
agacattaaaacgtaaatgtctaaaccatatgtgtcattataactgttctaaatgagacaaccaccatcgttagtcaagcatccatcaatatcagtgatg |
182 |
Q |
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| T |
45063370 |
agacattaaaacgtaaatgtctaaaccacatgtgtcattataactgttctaaatgagacaaccaccatcgttagtcaagcatccaccaatatcagtgatg |
45063271 |
T |
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| Q |
183 |
aggaaaagaacttggtaacctcttc |
207 |
Q |
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| T |
45063270 |
aggaaaagaactgggtaacctcttc |
45063246 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 3505103 - 3505067
Alignment:
| Q |
99 |
atgtctaaaccatatgtgtcattataactgttctaaa |
135 |
Q |
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|||||||| |||||||||||||||||| ||||||||| |
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| T |
3505103 |
atgtctaacccatatgtgtcattataattgttctaaa |
3505067 |
T |
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