View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_2 (Length: 422)
Name: NF2011_low_2
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 77 - 399
Target Start/End: Complemental strand, 29997465 - 29997141
Alignment:
| Q |
77 |
atatttttataaacgctatttgaagtgaaatattttaacaaaattgaaaaa-tgaatttgatatttatttaagagaagaagcgtgacgtgacgcaacgag |
175 |
Q |
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| T |
29997465 |
atatttttataaacgctatttgaagtgaaatattttaacaaatttgaaaaaatgaatttgatatttatttaagagaagaagcgtgacgtgacgcaacgag |
29997366 |
T |
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| Q |
176 |
aaactggcatttttatgtaagttagtagaaagaaataaggaagacgcaaaaagcattgatattaatcaatcaatcatgtcaactttgctatggacgcctt |
275 |
Q |
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| T |
29997365 |
aaactggcatttttatgtaagt-agtagaaagaaataaggaagacgcaaaaagcattgatattaatcaatca----tgtcaactttgctgtggacgcctt |
29997271 |
T |
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| Q |
276 |
ctttgtattctgtgaaactcaatttcaacggtggaagacaatcatctcagaagctgctaaacgcaaactcctcct------cctctgctcatttccgacg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
29997270 |
ctttgtattctgtgaaactcaatttcaacggtggaagacaatcatctcagaagctgcttaacgcaaactcctcctcctcctcctctgctcatttccgacg |
29997171 |
T |
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| Q |
370 |
cacgcaccgtcgctttacaatctcttgcaa |
399 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29997170 |
cacgcaccgtcgctttacaatctcttgcaa |
29997141 |
T |
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