View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_2_N (Length: 633)
Name: NF2011_low_2_N
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_2_N |
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Alignment Details
Target: chr3 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 13 - 581
Target Start/End: Original strand, 55382001 - 55382569
Alignment:
| Q |
13 |
aatatcaatgaggttatgacctctatagacataccagtagcaaacagattagaaaggccagggaaatattgctttgtgataaacgaaacaatagccataa |
112 |
Q |
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| T |
55382001 |
aatatcaattaggttatgacctctatagacataccagtagcaaacagattagaaaggccagggaaatattgctttgtgataaacgaaacaatagccataa |
55382100 |
T |
|
| Q |
113 |
atacaagaagaatgaaaatcattttctataatggtacagtaatagcattcactagcatcttcaagctaattaaagacgtgttctatccattgttccaaca |
212 |
Q |
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| T |
55382101 |
atacaagaagaatgaaaatcattttctataatggtacagtaatagcattcactagcatcttcaagctaattaaagaggtgttctatccattgttccaaca |
55382200 |
T |
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| Q |
213 |
catcaggggaaccataccatggtctaatgagatcatctgaaccaaccggggagtggtaaactccatccagggaaatgttaagtgcaccgtcaagatgagc |
312 |
Q |
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| T |
55382201 |
catcaggggaaccataccatggtctaatgagatcatctgaaccaaccggggagtggtaaactccatccagggaaatgttaagtgcaccgtcaagatgagc |
55382300 |
T |
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| Q |
313 |
tgatacttctggcacaacaccatcgccccatacatctgcttgcccacaaacctgagaaattattattagaactttggtcagcataattgctgcatctatc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55382301 |
tgatacttctggcacaacaccatcgccccatacatctgcttgcccacaaacctgagaaattattattagaactttggtcagcataattgccgcatctatc |
55382400 |
T |
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| Q |
413 |
acaagcaaataatagcagtttgcaaaccatagttttggctataaattaacggttaaaacaacagcattcgctcacctgcttgtatccttggccaacaaag |
512 |
Q |
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| T |
55382401 |
acaagcaaataatagcagtttgcaaaccatagttttggctataaattaacggttaaaacaacagcattcattcacctgcttgtatccttggccaacaaag |
55382500 |
T |
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| Q |
513 |
cgagcacgcaatgttatgttaggtgaagaagtggttgcagctttgataatagcagcctcctcgggaagt |
581 |
Q |
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| T |
55382501 |
cgagcacgcaatgttatgttaggtgaagaagtggttgcagctttgataatagcagcctcctcgggaagt |
55382569 |
T |
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