View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_3_N (Length: 575)
Name: NF2011_low_3_N
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_3_N |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 63 - 537
Target Start/End: Complemental strand, 37974648 - 37974183
Alignment:
| Q |
63 |
aaaaaatcacctttaggcagaagctacatatgccaacttgagacgcttaatcaaacagacacttcttaaaacgtgaatccaaacatacacccatgagcga |
162 |
Q |
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| T |
37974648 |
aaaaaatgacctttaggcagaagctacatatgccaacttgggacgcttaatcaaacagacactt---aaaacgtcaatccaaacattcacccataagcaa |
37974552 |
T |
|
| Q |
163 |
agtgggaatcaatatttaaaaaccataattggaacaacatgatgaatatagtactaaagtgaatctggatcacacgcagtaattgaagtcataaagatgt |
262 |
Q |
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| T |
37974551 |
agtgggaatcaatatttaaaaaccataattggaacaacatgatgaatatagtattaaagtgaatctggatcacacgcagtaattgaactcataaagatgt |
37974452 |
T |
|
| Q |
263 |
ataggaacctcttgtcttggtctttgttattgtcatagtgtcagaacttagaaactatgcttggttatgagtggtgagcgatggtccttaagtacacctg |
362 |
Q |
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| T |
37974451 |
ataggaacctcttgtcttggtctttgttattgtcatagtgtcagaacttagaaactatgcttggttatgagtggtgagcgatggtccttaagtacacctg |
37974352 |
T |
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| Q |
363 |
tatggttctcacgaaaatgagatatacaaaattgttacacgtgtcttagtttggagaatcggtccccgcattgagggtcgagcccacagaacaatgcttt |
462 |
Q |
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| T |
37974351 |
tatggttctcacgaaaatgagatatacaaaattgttacacgtgtcttagtttggagaatcggtccccgcattgagggtcgagcccacagaacaatgcttt |
37974252 |
T |
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| Q |
463 |
tgtagtttgttgtgttatgttatgttatgaatgaataccatatttattattatatactagcacgttatatgctgc |
537 |
Q |
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| T |
37974251 |
tgtagtttgttgtgttatgt-----tatgaatgaataccata-ttattattatatactagcacgttatatgctgc |
37974183 |
T |
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