View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_4 (Length: 543)
Name: NF2011_low_4
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 29 - 516
Target Start/End: Original strand, 49271603 - 49272090
Alignment:
| Q |
29 |
aggttcttcaataccatcaccaacagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271603 |
aggttcttcaataccatcaccaacagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacag |
49271702 |
T |
|
| Q |
129 |
aacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaacc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49271703 |
aacttaaagctatatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaacaagatccccagctgcaccaccagtgctcacaaacc |
49271802 |
T |
|
| Q |
229 |
aaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaat |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271803 |
aaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaat |
49271902 |
T |
|
| Q |
329 |
gtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtatgtcctaat |
428 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49271903 |
gtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtgtgtcctaat |
49272002 |
T |
|
| Q |
429 |
gtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
516 |
Q |
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| T |
49272003 |
gtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
49272090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 29 - 516
Target Start/End: Original strand, 49277520 - 49278013
Alignment:
| Q |
29 |
aggttcttcaataccatcaccaacagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacag |
128 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
49277520 |
aggttcttcaataccagcaccaagagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagagtaccaggaacagaaggacag |
49277619 |
T |
|
| Q |
129 |
aacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaacc |
228 |
Q |
| |
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|| ||||||||| ||||||||||||||||| || ||||||||||||| || |||| ||||| ||| | ||||| |||||| ||||||||||||| |
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| T |
49277620 |
tacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttaaactggctaaaaaggttcccaggaaaaccaccggtgctcacaaacc |
49277719 |
T |
|
| Q |
229 |
aaaacccagacccaa------cctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagt |
322 |
Q |
| |
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|||||| || | | | ||| ||| | ||||||||||| ||| ||||||||||||||| || |||||||||| |||||| ||||||||||| |
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| T |
49277720 |
aaaacctagctctagttccctcttttgaaatcttccacacttttctctcactgcaaggactacccaatattggaatctcaacggtgagatcagtgagagt |
49277819 |
T |
|
| Q |
323 |
tggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtatgt |
422 |
Q |
| |
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||||||||||||| | | || || ||||||| || || | ||| || || |||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
49277820 |
tggaatgtaatcatgttcatattcatagaaataaactggcgagccaatggcttcagggttacggataacatcaagagggcatgttttgtttcttgtttgt |
49277919 |
T |
|
| Q |
423 |
cctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
516 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49277920 |
cctaatgttatgcctccattgtcagcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
49278013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 40 - 418
Target Start/End: Original strand, 49269166 - 49269544
Alignment:
| Q |
40 |
taccatcaccaacagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacagaacttaaagct |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| | | ||||||||||||| ||||||||||||||| | |
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| T |
49269166 |
taccatcaccaacagccataactttagttccatcggtatctgtgaaagttcgaacaggagcacataaagcaccaggaacagaaggacagaacttaaagat |
49269265 |
T |
|
| Q |
140 |
atatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagac |
239 |
Q |
| |
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||| || | || || ||| ||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||| |||||| |||||||| |
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| T |
49269266 |
atagattggaatcccagtgtctccttcaagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagat |
49269365 |
T |
|
| Q |
240 |
ccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagac |
339 |
Q |
| |
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|| | ||| ||||| || ||||||||| | ||||| | ||||| | || |||| | ||||| || ||||| |||||||||||| | || || |
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| T |
49269366 |
ccctcttttgaaagcttcaacacttttgactggttgcatgaactactcctaaatcgaattttaatggaaagatcagtttgagttggaatgtgtttaaaac |
49269465 |
T |
|
| Q |
340 |
ctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
418 |
Q |
| |
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||| ||||||||| ||||| || | ||||| | | | ||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
49269466 |
ctggtgcagagaagtacactggcgagccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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