View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2011_low_7 (Length: 395)
Name: NF2011_low_7
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2011_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 49272103 - 49272479
Alignment:
| Q |
1 |
cttgtagtggctttgtgttgaacaaaactaagagagaaaggaagcaaaagagttgaatgaaattcatggtttcttgannnnnnnnnnnnnnnnnnggatt |
100 |
Q |
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| T |
49272103 |
cttgtagtggctttgtgttgaacaaaactaagagagaaaggaagcaaaagagttgaatgaatttcatggtttcttgatttttttttttttttt---gatt |
49272199 |
T |
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| Q |
101 |
gtttgtagattgtgatgtttatgttgtgtctttctaagttaattgtatgattgtttatatagagaagcatgtcaggtttaatttggacatgtttatggag |
200 |
Q |
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| T |
49272200 |
gtttgtagattgtgatgtttatgttgtgtctttctaagttaattgtatgattgtttatatagagaagcatgtcaggtttaatttggacatgtttatggag |
49272299 |
T |
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| Q |
201 |
tgatggtataaaaaattaagttagtgatattatatatttgccatgagcgccacgcggtactagtttaaaatgaaattttgggaacttcgtggaacacgtt |
300 |
Q |
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| T |
49272300 |
tgatggtataaaaaattaagttagtgatattatatatttgccatgagcgccacgcggtactagtttaaaatgaaattttgggaacttcgtggaacacgtt |
49272399 |
T |
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| Q |
301 |
gatagaaaaataaacagcatcttcatccacaatggacttggtatgatatcccttcatcacgttgacttgtgaataatgat |
380 |
Q |
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| T |
49272400 |
gatagaaaaataaacagcatcttcatccacaatggacttggtatggtatcccttcatcacgttgacttgtgaataatgat |
49272479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49278026 - 49278102
Alignment:
| Q |
1 |
cttgtagtggctttgtgttgaacaaaactaagagagaaaggaagcaaaagagttgaatgaaattcatggtttcttga |
77 |
Q |
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||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
49278026 |
cttgtagtgcctttgtgttgaacaacgctgagagagaaaggaagcaaaagagttgaatgaatttcattgtttcttga |
49278102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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