View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2011_low_8 (Length: 382)

Name: NF2011_low_8
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2011_low_8
NF2011_low_8
[»] chr8 (1 HSPs)
chr8 (30-370)||(43468057-43468409)
[»] chr5 (4 HSPs)
chr5 (204-249)||(11067235-11067280)
chr5 (205-245)||(17150614-17150654)
chr5 (208-240)||(38224683-38224715)
chr5 (217-249)||(42360506-42360538)
[»] chr1 (2 HSPs)
chr1 (205-249)||(43449541-43449585)
chr1 (208-252)||(19411225-19411269)
[»] chr2 (1 HSPs)
chr2 (204-241)||(33041454-33041491)
[»] chr6 (1 HSPs)
chr6 (217-249)||(9536487-9536519)
[»] chr4 (3 HSPs)
chr4 (205-249)||(29693043-29693087)
chr4 (217-249)||(39939679-39939711)
chr4 (209-249)||(46832579-46832619)
[»] chr3 (1 HSPs)
chr3 (217-249)||(26106890-26106922)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 43468409 - 43468057
Alignment:
Q  30 gcaggctggagagtacttcccgtccctgcactctgctaacgtccttggctccaagtgagatgataaagtcttgggtgatcgcaatttgcaactcacaacc 129  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43468409 gcaggctggagagtacttcccgtccttgcactctgctaacgtccttggctccaagtgagatgataaagtcttgggtgatcgcaatttgcaactcacaacc 43468310  T
Q  130 atttcaatgcactannnnnnnnn-------------ggatatactatttgagctcacacacatatttgagaaaaggtcgnnnnnnnngaattaaatattg 216  Q
    |||| |||||||||                      ||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||    
T  43468309 atttgaatgcactattttttttttggataggaatttggatatactatttgagctcacacacatatttgagaaaaggtagaaaaaaa-gaattaaatattg 43468211  T
Q  217 tatatttttaaaataattaaatgatatgtatttatgtgcgcgcgttaatacagtgtgccaaaatactcgtgaccatcaaagtattttcatagcgtcacac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||    
T  43468210 tatatttttaaaataattaaatgatatgtatttatgtgcgcgcgttaatatagtgtgccaaaatattcatgaccatcaaagtattttcatagcgtcacac 43468111  T
Q  317 acccaaagatactttgagcatacaagtatactcttttacaatttgcatgagtat 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43468110 acccaaagatactttgagcatacaagtatactcttttacaatttgcatgagtat 43468057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 11067280 - 11067235
Alignment:
Q  204 gaattaaatattgtatatttttaaaataattaaatgatatgtattt 249  Q
    |||||||||| || ||||||||||||||||||||||||||||||||    
T  11067280 gaattaaataatgaatatttttaaaataattaaatgatatgtattt 11067235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 17150614 - 17150654
Alignment:
Q  205 aattaaatattgtatatttttaaaataattaaatgatatgt 245  Q
    ||||||||| |  ||||||||||||||||||||||||||||    
T  17150614 aattaaataataaatatttttaaaataattaaatgatatgt 17150654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 38224683 - 38224715
Alignment:
Q  208 taaatattgtatatttttaaaataattaaatga 240  Q
    |||||| ||||||||||||||||||||||||||    
T  38224683 taaataatgtatatttttaaaataattaaatga 38224715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 42360506 - 42360538
Alignment:
Q  217 tatatttttaaaataattaaatgatatgtattt 249  Q
    |||||||||||||||||||||| ||||||||||    
T  42360506 tatatttttaaaataattaaataatatgtattt 42360538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 43449541 - 43449585
Alignment:
Q  205 aattaaatattgtatatttttaaaataattaaatgatatgtattt 249  Q
    ||||||||| | | |||||||||||||||||||||||||||||||    
T  43449541 aattaaataatatgtatttttaaaataattaaatgatatgtattt 43449585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 19411269 - 19411225
Alignment:
Q  208 taaatattgtatatttttaaaataattaaatgatatgtatttatg 252  Q
    |||||| | ||||||||| |||||||| |||||||||||||||||    
T  19411269 taaataatatatatttttgaaataatttaatgatatgtatttatg 19411225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 33041454 - 33041491
Alignment:
Q  204 gaattaaatattgtatatttttaaaataattaaatgat 241  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  33041454 gaattaaataatgtatatttttcaaataattaaatgat 33041491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 9536487 - 9536519
Alignment:
Q  217 tatatttttaaaataattaaatgatatgtattt 249  Q
    |||||||||||||||||||||| ||||||||||    
T  9536487 tatatttttaaaataattaaataatatgtattt 9536519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 29693043 - 29693087
Alignment:
Q  205 aattaaatattgtatatttttaaaataattaaatgatatgtattt 249  Q
    ||||||||| | ||||||| |||||||||||||| ||||||||||    
T  29693043 aattaaataatatatatttataaaataattaaataatatgtattt 29693087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 39939711 - 39939679
Alignment:
Q  217 tatatttttaaaataattaaatgatatgtattt 249  Q
    |||||||||||||||||||||| ||||||||||    
T  39939711 tatatttttaaaataattaaattatatgtattt 39939679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 46832579 - 46832619
Alignment:
Q  209 aaatattgtatatttttaaaataattaaatgatatgtattt 249  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  46832579 aaataatgtatatttttcaaataattaaatcatatgtattt 46832619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 26106890 - 26106922
Alignment:
Q  217 tatatttttaaaataattaaatgatatgtattt 249  Q
    ||||||||||||||||||||||||||| |||||    
T  26106890 tatatttttaaaataattaaatgatatatattt 26106922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University