View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2011_low_9 (Length: 313)

Name: NF2011_low_9
Description: NF2011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2011_low_9
NF2011_low_9
[»] chr4 (9 HSPs)
chr4 (21-311)||(37257067-37257357)
chr4 (21-161)||(37237611-37237751)
chr4 (110-192)||(37253022-37253104)
chr4 (23-91)||(37244886-37244954)
chr4 (21-91)||(37232696-37232766)
chr4 (210-258)||(37237812-37237860)
chr4 (109-192)||(37232772-37232855)
chr4 (194-258)||(37253136-37253200)
chr4 (209-258)||(37232902-37232951)
[»] chr6 (3 HSPs)
chr6 (21-91)||(14253963-14254033)
chr6 (21-91)||(14316691-14316761)
chr6 (113-192)||(14351662-14351741)
[»] scaffold1652 (1 HSPs)
scaffold1652 (21-86)||(595-660)
[»] scaffold1176 (1 HSPs)
scaffold1176 (113-161)||(124-172)
[»] scaffold0902 (1 HSPs)
scaffold0902 (21-89)||(3209-3277)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 37257067 - 37257357
Alignment:
Q  21 acatcatcaaatcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcggtggagttgtctgaaggtgaaggtgcttc 120  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37257067 acatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaaggtgcttc 37257166  T
Q  121 agaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggaggggaaggaaaaggagcgttcttcacaggt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37257167 agaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggaggggaaggagaaggagcgttcttcacaggt 37257266  T
Q  221 acgggaggagatgcaaccggtgagacagcggaaggagatggtgcctgagaggatttgggtggagtggcaacgggtgatattgttggagatg 311  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37257267 acgggaggagatgccaccggtgagacagcggaaggagatggtgcctgagaggatttgggtggagtggcaacgggtgatatggttggagatg 37257357  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 37237611 - 37237751
Alignment:
Q  21 acatcatcaaatcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcggtggagttgtctgaaggtgaaggtgcttc 120  Q
    ||||||||||| | ||||| ||||| | | |||| |||||| | |||| |||||||||||| || |||||| ||||||| || |||||||||||||||||    
T  37237611 acatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcgatggagttatcagaaggtgaaggtgcttc 37237710  T
Q  121 agaaggagtagtagagatggatgatggagtaacagcaggag 161  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  37237711 agaaggaggagtagagatggatgatggagtaacagcaggag 37237751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 37253022 - 37253104
Alignment:
Q  110 gaaggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggagg 192  Q
    |||||| |||| ||||||| ||| || |||||||||||||||| ||||||||| |||||||||||||| || |||||||||||    
T  37253022 gaaggtccttcggaaggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggagg 37253104  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 37244886 - 37244954
Alignment:
Q  23 atcatcaaatcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcg 91  Q
    ||||||||| ||||||||||||||| |||||| |||||||| ||||| ||||||||||| |||||||||    
T  37244886 atcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcg 37244954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 37232696 - 37232766
Alignment:
Q  21 acatcatcaaatcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcg 91  Q
    ||||||||||| | |||||||||| || |||||| |||||||| |||||||||||||| || |||||||||    
T  37232696 acatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 37232766  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 37237812 - 37237860
Alignment:
Q  210 tcttcacaggtacgggaggagatgcaaccggtgagacagcggaaggaga 258  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  37237812 tcttcacaggtacgggaggagatgccaccggtgagtcagcggagggaga 37237860  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 37232772 - 37232855
Alignment:
Q  109 tgaaggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggagg 192  Q
    ||| |||||||||| ||||| ||| ||||| ||||||||||||||||||||||   | ||||| ||  ||||||||||||||||    
T  37232772 tgatggtgcttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggcggcgggtgaaccagaggaagcaggagg 37232855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 37253136 - 37253200
Alignment:
Q  194 gaaggaaaaggagcgttcttcacaggtacgggaggagatgcaaccggtgagacagcggaaggaga 258  Q
    |||||| | ||||||||||||||||||| ||||| ||||||  |||||||| ||||||| |||||    
T  37253136 gaaggagatggagcgttcttcacaggtatgggagcagatgccgccggtgagtcagcggagggaga 37253200  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 37232902 - 37232951
Alignment:
Q  209 ttcttcacaggtacgggaggagatgcaaccggtgagacagcggaaggaga 258  Q
    |||||||||||| |||||||||||||| ||||||||  |||||| |||||    
T  37232902 ttcttcacaggtgcgggaggagatgcagccggtgagtgagcggagggaga 37232951  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 14253963 - 14254033
Alignment:
Q  21 acatcatcaaatcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcg 91  Q
    ||||||||||| |||||||||||||||  ||||| |||||||||||||| || |||||||| |||||||||    
T  14253963 acatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcg 14254033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 14316691 - 14316761
Alignment:
Q  21 acatcatcaaatcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcg 91  Q
    ||||||||||| |||||||||||||||  ||||| |||||||| |||| ||| |||||||| |||||||||    
T  14316691 acatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcg 14316761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 14351662 - 14351741
Alignment:
Q  113 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggagg 192  Q
    ||||||| ||| || | ||||||||  ||||||||||||||||||||||  |||||||||||  || |||||||| ||||    
T  14351662 ggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagcatgagg 14351741  T

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Target: scaffold1652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 660 - 595
Alignment:
Q  21 acatcatcaaatcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaag 86  Q
    ||||||||||| |||||| ||||||||  ||||| |||||||| ||||| || |||||||| ||||    
T  660 acatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

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Target: scaffold1176 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 172 - 124
Alignment:
Q  113 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggag 161  Q
    ||||||| ||| |||| ||||||||| ||||||||||| ||||||||||    
T  172 ggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggag 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 3209 - 3277
Alignment:
Q  21 acatcatcaaatcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcgg 89  Q
    ||||||||||| |||| | ||||||||  ||||| |||||||| ||||| || |||||||| |||||||    
T  3209 acatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

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