View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20120_high_12 (Length: 255)
Name: NF20120_high_12
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_high_12 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 2331244 - 2331095
Alignment:
| Q |
107 |
actccaaggatatggttaccttacacataacacgat-tagatccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2331244 |
actccaaggatatggttaccttacacataacacgatctagatccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttc |
2331145 |
T |
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| Q |
206 |
tctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaattcca |
255 |
Q |
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| T |
2331144 |
tctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaattcca |
2331095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 2351510 - 2351401
Alignment:
| Q |
146 |
atccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaat |
245 |
Q |
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||||| ||||||||| || | ||||||||||||||||| |||| ||||||||| ||||| || ||||||||||| | ||||| || ||||||||||||| |
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| T |
2351510 |
atcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaat |
2351411 |
T |
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| Q |
246 |
cgaaattcca |
255 |
Q |
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|||||||||| |
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| T |
2351410 |
cgaaattcca |
2351401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 2294321 - 2294212
Alignment:
| Q |
146 |
atccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaat |
245 |
Q |
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| T |
2294321 |
atcctaggagaaatatgaacttgcaatggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaat |
2294222 |
T |
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| Q |
246 |
cgaaattcca |
255 |
Q |
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|||||||||| |
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| T |
2294221 |
cgaaattcca |
2294212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 2303934 - 2303825
Alignment:
| Q |
146 |
atccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaat |
245 |
Q |
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||||| |||||||||||| | ||||||||||||||||| |||||| ||||||| ||||| || ||||||||||| || ||||| |||| |||||||| |
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| T |
2303934 |
atcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctggaagcttccaat |
2303835 |
T |
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| Q |
246 |
cgaaattcca |
255 |
Q |
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|||||||||| |
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| T |
2303834 |
cgaaattcca |
2303825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 2310652 - 2310543
Alignment:
| Q |
146 |
atccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaat |
245 |
Q |
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||||| |||||||||||| | |||| |||||||||||| |||||||||||||| ||| | || | ||||||||| | || ||||| ||||||||||||| |
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| T |
2310652 |
atcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaat |
2310553 |
T |
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| Q |
246 |
cgaaattcca |
255 |
Q |
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|||||||||| |
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| T |
2310552 |
cgaaattcca |
2310543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 2321630 - 2321527
Alignment:
| Q |
152 |
ggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaat |
251 |
Q |
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|||||||||||| | ||||||||||||||||| |||||||||||||| | ||| || ||||||||||| | |||||||| |||| || ||||| ||||| |
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| T |
2321630 |
ggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaat |
2321531 |
T |
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| Q |
252 |
tcca |
255 |
Q |
| |
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|||| |
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| T |
2321530 |
tcca |
2321527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 2327482 - 2327380
Alignment:
| Q |
153 |
gagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaatt |
252 |
Q |
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||||||||||| | ||||||||||||||||| |||| |||||||| ||| ||||||||||| || | |||||||| |||||||||||||||||||| |
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| T |
2327482 |
gagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctccggaaccttccaatcgaaatt |
2327383 |
T |
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| Q |
253 |
cca |
255 |
Q |
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||| |
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| T |
2327382 |
cca |
2327380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 2331289 - 2331242
Alignment:
| Q |
17 |
cagagaatcgaagaatagtttaattagacagttgcagagacatttaact |
65 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
2331289 |
cagagaatc-aagaatagtttaattacacagttgcagagacatttaact |
2331242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 26507134 - 26507058
Alignment:
| Q |
143 |
tagatccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaac |
219 |
Q |
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|||||||| ||||| || ||||| | |||||||| |||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
26507134 |
tagatcctaggagatatttgagcttccaatggatatttcatcaccatagtaaattcctgtttttctgacaaatcaac |
26507058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 41127523 - 41127446
Alignment:
| Q |
142 |
ttagatccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaac |
219 |
Q |
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||||||||| |||||||||||| | |||| |||||||||||| |||| |||||||| ||| || ||||||||||| |
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| T |
41127523 |
ttagatcctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaac |
41127446 |
T |
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