View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20120_high_14 (Length: 250)

Name: NF20120_high_14
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20120_high_14
NF20120_high_14
[»] chr3 (11 HSPs)
chr3 (160-243)||(22894766-22894849)
chr3 (138-243)||(36749492-36749596)
chr3 (159-243)||(34749919-34750003)
chr3 (159-243)||(36370359-36370443)
chr3 (159-243)||(48200771-48200855)
chr3 (137-243)||(44000075-44000180)
chr3 (159-243)||(21559647-21559731)
chr3 (137-243)||(46111944-46112049)
chr3 (137-243)||(51339784-51339888)
chr3 (159-237)||(29472901-29472978)
chr3 (137-236)||(30735496-30735594)
[»] chr4 (10 HSPs)
chr4 (159-243)||(3672360-3672444)
chr4 (1-96)||(3445570-3445665)
chr4 (137-243)||(6112716-6112820)
chr4 (159-244)||(28093117-28093202)
chr4 (159-243)||(7217851-7217935)
chr4 (159-243)||(44275792-44275875)
chr4 (159-228)||(49243916-49243984)
chr4 (137-243)||(21390956-21391060)
chr4 (99-135)||(3445690-3445726)
chr4 (138-228)||(35545013-35545102)
[»] chr5 (10 HSPs)
chr5 (137-241)||(13347216-13347319)
chr5 (137-243)||(39371013-39371118)
chr5 (137-243)||(2237362-2237467)
chr5 (159-243)||(9408060-9408144)
chr5 (159-243)||(14831630-14831714)
chr5 (159-243)||(42683685-42683769)
chr5 (137-243)||(40887942-40888047)
chr5 (137-241)||(31800646-31800748)
chr5 (176-243)||(1815655-1815721)
chr5 (159-243)||(27553395-27553478)
[»] chr7 (15 HSPs)
chr7 (137-244)||(26972203-26972309)
chr7 (159-243)||(34108512-34108596)
chr7 (137-243)||(36346565-36346669)
chr7 (138-243)||(30887786-30887890)
chr7 (137-243)||(28307495-28307600)
chr7 (137-243)||(45782660-45782765)
chr7 (137-235)||(29953572-29953669)
chr7 (159-243)||(7699904-7699988)
chr7 (159-243)||(7700102-7700186)
chr7 (159-243)||(7700300-7700384)
chr7 (159-243)||(7700498-7700582)
chr7 (159-243)||(34828151-34828234)
chr7 (137-243)||(31148376-31148480)
chr7 (159-243)||(21807344-21807427)
chr7 (137-243)||(5811164-5811268)
[»] scaffold0062 (1 HSPs)
scaffold0062 (137-243)||(6804-6909)
[»] chr8 (9 HSPs)
chr8 (137-243)||(42162684-42162789)
chr8 (159-243)||(44081866-44081950)
chr8 (159-243)||(31318891-31318975)
chr8 (137-243)||(10203750-10203855)
chr8 (159-241)||(43186115-43186196)
chr8 (159-236)||(12665438-12665515)
chr8 (159-243)||(18184639-18184722)
chr8 (159-243)||(30432425-30432508)
chr8 (127-243)||(36189302-36189415)
[»] chr1 (4 HSPs)
chr1 (137-243)||(2509110-2509215)
chr1 (138-243)||(39249864-39249968)
chr1 (137-239)||(34307138-34307239)
chr1 (159-243)||(46901756-46901840)
[»] chr2 (6 HSPs)
chr2 (159-243)||(44958199-44958283)
chr2 (137-243)||(33732655-33732759)
chr2 (159-243)||(14573081-14573165)
chr2 (137-243)||(16089908-16090011)
chr2 (137-243)||(37498863-37498970)
chr2 (159-243)||(3830919-3831002)
[»] chr6 (5 HSPs)
chr6 (158-241)||(15345680-15345762)
chr6 (159-243)||(3986927-3987010)
chr6 (159-241)||(3118068-3118150)
chr6 (159-243)||(13697654-13697737)
chr6 (159-243)||(24208530-24208613)
[»] scaffold0043 (1 HSPs)
scaffold0043 (137-212)||(87163-87236)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 22894849 - 22894766
Alignment:
Q  160 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894849 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 22894766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 36749596 - 36749492
Alignment:
Q  138 aaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 237  Q
    |||||||||||| |||| |  |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  36749596 aaaaagataggt-agacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttc 36749498  T
Q  238 atctct 243  Q
    ||||||    
T  36749497 atctct 36749492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 34749919 - 34750003
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  34749919 tttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctct 34750003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 36370359 - 36370443
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  36370359 tttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctct 36370443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 48200855 - 48200771
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  48200855 tttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttttcatctct 48200771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 44000180 - 44000075
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  44000180 gaaaaagataggt-agacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  237 catctct 243  Q
    |||||||    
T  44000081 catctct 44000075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 21559731 - 21559647
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||| | ||||||||||||||    
T  21559731 tttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattaccctttttcatctct 21559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 46111944 - 46112049
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||| | |||| |||| || |||||||||||||||||| ||||||| ||||||||||||||| |||||||    
T  46111944 gaaaaagataggt-agacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  237 catctct 243  Q
    |||||||    
T  46112043 catctct 46112049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 51339784 - 51339888
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||| ||||||||||||  |||||| |||| ||||||| ||||||| ||||||||||||||| |||||||    
T  51339784 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaca-tcatgtgttagaggtattttagtaattttacatcatatcatcacccttttt 51339881  T
Q  237 catctct 243  Q
    |||||||    
T  51339882 catctct 51339888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 29472978 - 29472901
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 237  Q
    ||||||||||||  |||||| |||||| ||||| |||||||||||| ||||||| |||||||||||||||||| |||||    
T  29472978 tttttcatacaccacttatgcacaccc-catgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 30735496 - 30735594
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttg-agtaattatacatcatatcatcatcctttt 235  Q
    ||||||||||||| |||| |  ||||||||||||  ||||||||||| | ||||| ||||||||||||  |||||||  |||||||||||||| ||||||    
T  30735496 gaaaaagataggt-agacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 3672444 - 3672360
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3672444 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttcatctct 3672360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3445570 - 3445665
Alignment:
Q  1 ttggaagagaaaaatgagaagnnnnnnngtatggctgatatgataggaatcggttgtgattgtggggaataaattaaattattcttaattggtact 96  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3445570 ttggaagagaaaaatgagaagaaaaaaagtatggctgatatgataggaatcggttgtgattgtggggaataaattaaattattcttaattggtact 3445665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 6112820 - 6112716
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6112820 gaaaaagataggt-agacactctttttcatacacttcttatgtacactc-catgtattaggggtatttgagtaattttacatcatatcatcatccttttt 6112723  T
Q  237 catctct 243  Q
    |||||||    
T  6112722 catctct 6112716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 28093117 - 28093202
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctctc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  28093117 tttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttttcatctctc 28093202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 7217935 - 7217851
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||| ||||||| ||||||||||||||| ||||||| ||||||    
T  7217935 tttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttttatctct 7217851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 44275875 - 44275792
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| ||||||| ||||||    
T  44275875 tttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatcatatcatcaccctttttaatctct 44275792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 49243984 - 49243916
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatca 228  Q
    |||||||||||| |||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||    
T  49243984 tttttcatacacctcttatgtacactc-catgtattaggggtattttagtaattttacatcatatcatca 49243916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 21390956 - 21391060
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||| | ||||||||||| |||||| |||||||||||| ||||||| ||||||||||  |||  | ||||    
T  21390956 gaaaaagataggt-agacaccctttttcatacaccttttatgtacacc-tcatgtgttaggggtattttagtaattttacatcatatattcactcatttt 21391053  T
Q  237 catctct 243  Q
    |||||||    
T  21391054 catctct 21391060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 3445690 - 3445726
Alignment:
Q  99 ttgattagaatgcttaattccttttattatttttata 135  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3445690 ttgattagaatgcttaattccttttattaattttata 3445726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 35545102 - 35545013
Alignment:
Q  138 aaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttg-agtaattatacatcatatcatca 228  Q
    |||||||||||| |||| |  ||||||||||||  ||||||||||| | ||||| ||||||||||||  ||||||| |||||||||||||||    
T  35545102 aaaaagataggt-agacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaattttacatcatatcatca 35545013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 13347319 - 13347216
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  13347319 gaaaaagataggt-agacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  237 catct 241  Q
    |||||    
T  13347220 catct 13347216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 39371118 - 39371013
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  39371118 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  237 catctct 243  Q
    |||||||    
T  39371019 catctct 39371013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 2237467 - 2237362
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  2237467 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  237 catctct 243  Q
    |||||||    
T  2237368 catctct 2237362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 9408060 - 9408144
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  9408060 tttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctct 9408144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 14831714 - 14831630
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||    
T  14831714 tttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttttcatctct 14831630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 42683769 - 42683685
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  42683769 tttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttttcatctct 42683685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 40887942 - 40888047
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||| |||||||||||||| ||| |||||| ||||||| ||||||| |||||||||||| || |||||||    
T  40887942 gaaaaagataggt-agacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  237 catctct 243  Q
    |||||||    
T  40888041 catctct 40888047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 31800748 - 31800646
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    |||||||||||| ||||| |  |||||||||||| |||| ||||||||| ||| | |||||||||||| ||||||| ||||||||||||||| || ||||    
T  31800748 gaaaaagatagg-cagacaccctttttcatacacctcttgtgtacaccc-catatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  237 catct 241  Q
    |||||    
T  31800650 catct 31800646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 1815655 - 1815721
Alignment:
Q  176 atgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| || |||||||||||    
T  1815655 atgtacaccct-atgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctct 1815721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 27553395 - 27553478
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| ||||||||||||||| |||| ||||| |||||| ||||||| ||||||| || |||| | |||||| |||||    
T  27553395 tttttcatacacctcttatgtacaccct-atgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctct 27553478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 26972203 - 26972309
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  26972203 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  237 catctctc 244  Q
    ||||||||    
T  26972302 catctctc 26972309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 34108596 - 34108512
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  34108596 tttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctct 34108512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 36346565 - 36346669
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  36346565 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttttt 36346662  T
Q  237 catctct 243  Q
    |||||||    
T  36346663 catctct 36346669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 30887890 - 30887786
Alignment:
Q  138 aaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 237  Q
    ||||||||| || |||| |  ||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||| ||||||||||||||| ||||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccc-catgtattagaggtatttaagtaattttacatcatatcatcaccctttttc 30887792  T
Q  238 atctct 243  Q
    ||||||    
T  30887791 atctct 30887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 28307495 - 28307600
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||   ||||||||||||| |||||||||||||| ||| | ||| |||||||| ||||||| ||||||||||||||| |||||||    
T  28307495 gaaaaagataggt-agacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  237 catctct 243  Q
    |||||||    
T  28307594 catctct 28307600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 45782660 - 45782765
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  ||||| |||||||| |||||||||| | ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  45782660 gaaaaagataggt-agacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  237 catctct 243  Q
    |||||||    
T  45782759 catctct 45782765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 29953572 - 29953669
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 235  Q
    ||||||||||||| |||| |  |||||||||||||||||||||| ||   |||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  29953572 gaaaaagataggt-agacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccctttt 29953669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 7699904 - 7699988
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || |||||||||||||||||||| ||||||    
T  7699904 tttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctct 7699988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 7700102 - 7700186
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || |||||||||||||||||||| ||||||    
T  7700102 tttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctct 7700186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 7700300 - 7700384
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || |||||||||||||||||||| ||||||    
T  7700300 tttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctct 7700384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 7700498 - 7700582
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || |||||||||||||||||||| ||||||    
T  7700498 tttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctct 7700582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 34828234 - 34828151
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||||  |||||| |||||| ||| | |||||||||||| ||||||| |||||||||||||||||  |||||||||||    
T  34828234 tttttcatacaccacttatgcacaccc-catatgttaggggtattttagtaattttacatcatatcatcatcacttttcatctct 34828151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 31148480 - 31148376
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||| ||||||  |||||| ||| | |||||  ||||| ||||||| ||||||||||||||| || ||||    
T  31148480 gaaaaagataggt-agacactctttttcatacacctcttatacacaccc-catatgttaggcttattttagtaattttacatcatatcatcacccatttt 31148383  T
Q  237 catctct 243  Q
    |||||||    
T  31148382 catctct 31148376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 21807344 - 21807427
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||| |||||||||| || ||||||| || || |||||||||||| |||||||  |||| | |||||||||| |||||||||||    
T  21807344 ttttttatacacttctcatatacaccc-cacgtgttaggggtattttagtaatttcacataacatcatcatccattttcatctct 21807427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 5811164 - 5811268
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  ||||| |||||| ||  ||||||||| |||||| |||||||||||| |||||||  |||||| ||| ||| || ||||    
T  5811164 gaaaaagataggt-agacacccttttttatacacctcccatgtacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcacccctttt 5811261  T
Q  237 catctct 243  Q
    |||||||    
T  5811262 catctct 5811268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 6909 - 6804
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  6909 gaaaaagataggt-agataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  237 catctct 243  Q
    |||||||    
T  6810 catctct 6804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 42162789 - 42162684
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  42162789 gaaaaagataggt-agacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  237 catctct 243  Q
    |||||||    
T  42162690 catctct 42162684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 44081950 - 44081866
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  44081950 tttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctct 44081866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 31318975 - 31318891
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  31318975 tttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcaccctttttcatctct 31318891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 10203855 - 10203750
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| || |||||||    
T  10203855 gaaaaagataggt-agacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  237 catctct 243  Q
    |||||||    
T  10203756 catctct 10203750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 43186196 - 43186115
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatct 241  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||||| | ||||||||||    
T  43186196 tttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaattttatatcatatcatcaccttttttcatct 43186115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 12665515 - 12665438
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    |||||| ||||| ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  12665515 tttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 18184722 - 18184639
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| | ||||||||||| |||||| |||||||||||| ||||||| || |||||||||||| || |||||||||||    
T  18184722 tttttcatacaccttttatgtacacc-tcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttcatctct 18184639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 30432508 - 30432425
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| ||||||||||| || ||| ||||| |||||||| ||||||| ||||||||||||||| || |||||||||||    
T  30432508 tttttcatacacctcttatgtacatcc-catatattatgggtattttagtaattttacatcatatcatcaccccttttcatctct 30432425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 36189415 - 36189302
Alignment:
Q  127 atttttatacgaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcat 226  Q
    |||||| || ||||||||||||| |||| |  ||||||||||||  |||||||||||||  ||||  ||||||||||| | ||||| || ||||||||||    
T  36189415 atttttttaggaaaaagataggt-agacaccctttttcatacaccacttatgtacacccatatgt--taggggtattttaataattttatatcatatcat 36189319  T
Q  227 catcctttttcatctct 243  Q
    ||  | |||||||||||    
T  36189318 cactccttttcatctct 36189302  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 2509215 - 2509110
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| || |||||||    
T  2509215 gaaaaagataggt-agacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  237 catctct 243  Q
    |||||||    
T  2509116 catctct 2509110  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 39249864 - 39249968
Alignment:
Q  138 aaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 237  Q
    |||||||||||| |||| | ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  39249864 aaaaagataggt-agacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttc 39249962  T
Q  238 atctct 243  Q
    ||||||    
T  39249963 atctct 39249968  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 34307138 - 34307239
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| | ||||||||||||| |||||||||||| | ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  34307138 gaaaaagataggt-agacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  237 cat 239  Q
    |||    
T  34307237 cat 34307239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 46901756 - 46901840
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||| ||||||||||||||  ||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  46901756 tttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttttcatctct 46901840  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 44958283 - 44958199
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||| ||||||    
T  44958283 tttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttttatctct 44958199  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 33732759 - 33732655
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| |  |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| || |||||||    
T  33732759 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaccc-catatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  237 catctct 243  Q
    |||||||    
T  33732661 catctct 33732655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 14573165 - 14573081
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||| ||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| |||||| |||||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctct 14573081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 16090011 - 16089908
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||| | ||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| || |||||||    
T  16090011 gaaaaagataggt-agacaccttttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatcatatcacca-ccttttt 16089915  T
Q  237 catctct 243  Q
     ||||||    
T  16089914 tatctct 16089908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 37498863 - 37498970
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatc--cttt 234  Q
    ||||||||||||| |||| |  ||||| |||||| ||||||||||| || ||||| |||||||||||| ||||||| ||||||||||||||| |  ||||    
T  37498863 gaaaaagataggt-agacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  235 ttcatctct 243  Q
    |||||||||    
T  37498962 ttcatctct 37498970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 3830919 - 3831002
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    |||||||||||| |||||||||||||| ||||| |||||||||| | ||||||| ||||||| || |||| |  |||||||||||    
T  3830919 tttttcatacacctcttatgtacaccc-catgtgttaggggtatattagtaattttacatcagataatcaccacttttcatctct 3831002  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 15345680 - 15345762
Alignment:
Q  158 ttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatct 241  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||  | |||||||||||| | ||||||||||    
T  15345680 ttttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaatttgatatcatatcatcaccttttttcatct 15345762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 3986927 - 3987010
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||| || ||||||| |||| ||||||||| |||||||||||||||| |||||||||| ||||||| |||||||||||    
T  3986927 tttttcatacatttattatgtataccc-catgtattaagggtatttgagtaattttacatcatattatcatcccttttcatctct 3987010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 3118068 - 3118150
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatct 241  Q
    |||||||||||  |||||||||||| | |||||||||||||||||| ||||||| |||||||| ||| || ||||||| ||||    
T  3118068 tttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttttatct 3118150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 13697737 - 13697654
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||||||||| | ||||||||||||| ||||| |||| | ||||| ||||||| || |||||||||||| || |||||||||||    
T  13697737 tttttcatacattacttatgtacaccc-catgtgttagagatattttagtaattttatatcatatcatcacccgttttcatctct 13697654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 24208613 - 24208530
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct 243  Q
    ||||| |||||| ||| || |||||| |||||| |||||||||||| |||||||  |||||| ||| ||| ||||||||||||||    
T  24208613 ttttttatacacctctcatttacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttcatctct 24208530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 87163 - 87236
Alignment:
Q  137 gaaaaagataggtcagacgcattttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaatt 212  Q
    ||||||||||||| |||| | ||||||||||||| | |||||||||||| ||||| |||||||||||| |||||||    
T  87163 gaaaaagataggt-agacaccttttttcatacaccttttatgtacaccc-catgtgttaggggtattttagtaatt 87236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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