View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20120_high_15 (Length: 250)
Name: NF20120_high_15
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4243908 - 4244144
Alignment:
| Q |
1 |
catcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatat |
100 |
Q |
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| T |
4243908 |
catcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatat |
4244007 |
T |
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| Q |
101 |
tgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgctt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244008 |
tgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgctt |
4244107 |
T |
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| Q |
201 |
attgcagacattgaaataacaatgaaaacagctagaa |
237 |
Q |
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| T |
4244108 |
attgcagacattgaaataacaatgaaaacagctagaa |
4244144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6186964 - 6187198
Alignment:
| Q |
1 |
catcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6186964 |
catcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcaaatat |
6187063 |
T |
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| Q |
101 |
tgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgctt |
200 |
Q |
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| T |
6187064 |
agatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttgttttgtttgaagttgctt |
6187163 |
T |
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| Q |
201 |
attgcagacattgaaataacaatgaaaacagctag |
235 |
Q |
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|||| ||||| |||||||| |||||||||||||| |
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| T |
6187164 |
attgatgacatcgaaataacgatgaaaacagctag |
6187198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 6170064 - 6170129
Alignment:
| Q |
47 |
tacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttg |
112 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||| || || || |||| |||||| |
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| T |
6170064 |
tacttgatcaccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttg |
6170129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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