View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20120_high_2 (Length: 587)

Name: NF20120_high_2
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20120_high_2
NF20120_high_2
[»] chr2 (14 HSPs)
chr2 (260-577)||(2294375-2294688)
chr2 (18-213)||(2310464-2310659)
chr2 (18-213)||(2294133-2294328)
chr2 (18-213)||(2303746-2303941)
chr2 (18-213)||(2321448-2321643)
chr2 (34-210)||(2351338-2351514)
chr2 (18-213)||(2327301-2327496)
chr2 (19-212)||(2331017-2331210)
chr2 (260-522)||(2321687-2321932)
chr2 (260-323)||(2303983-2304046)
chr2 (507-545)||(2321971-2322009)
chr2 (260-373)||(2327575-2327685)
chr2 (546-577)||(2322076-2322107)
chr2 (290-373)||(2331305-2331388)
[»] chr8 (2 HSPs)
chr8 (18-206)||(41127328-41127519)
chr8 (131-206)||(26507056-26507131)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 260 - 577
Target Start/End: Original strand, 2294375 - 2294688
Alignment:
Q  260 aaccaccctagattctctgcctgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcatataatgatccc 359  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2294375 aaccaccctagattctctgcttgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcatataatgatccg 2294474  T
Q  360 ttatgcatacatatatatgccttcacatatgttattgttctttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtca 459  Q
    |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294475 ttatgcata----tatatgccttcacatatgttattgttctttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtca 2294570  T
Q  460 agatactttcattgtaaaaatatatgatctttgttgtagtaatattgaagttggtttattttgttaatctgtttggtcttggcggttatagattatgttt 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294571 agatactttcattgtaaaaatatatgatctttgttgtagtaatattgaagttggtttattttgttaatctgtttggtcttggcggttatagattatgttt 2294670  T
Q  560 cctccctaaacatctgtg 577  Q
    ||||||||||||||||||    
T  2294671 cctccctaaacatctgtg 2294688  T

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Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 2310464 - 2310659
Alignment:
Q  18 gtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2310464 gtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggtt 2310563  T
Q  118 ccagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2310564 ccagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccagtgcaagttcatatttctcctaggatatagatt 2310659  T

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Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 2294133 - 2294328
Alignment:
Q  18 gtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggtt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2294133 gtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcgattggaaggtt 2294232  T
Q  118 ccagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294233 ccagagggcgggcatgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 2294328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 2303746 - 2303941
Alignment:
Q  18 gtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggtt 117  Q
    ||||| ||||| ||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  2303746 gtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttggaatttcgattggaagctt 2303845  T
Q  118 ccagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 213  Q
    |||||||||||  ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303846 ccagagggcggctatgttgatttgtcggaaaaacaagaattcaatatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 2303941  T

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Target: chr2; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 2321448 - 2321643
Alignment:
Q  18 gtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggtt 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||    
T  2321448 gtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcaattggcagctt 2321547  T
Q  118 ccagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 213  Q
    || ||||| || |||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2321548 ccggagggtggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtatagatt 2321643  T

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Target: chr2; HSP #6
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 2351338 - 2351514
Alignment:
Q  34 agaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatg 133  Q
    ||||| |||||||||  ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  2351338 agaatctgtcccggatataatttagctttgcttcacttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatg 2351437  T
Q  134 ttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatag 210  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  2351438 ttgatttgtcggaaaaacaagaattcactgtggtgatgaaaaatccattgcaagttcgtatttctcctaggatatag 2351514  T

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Target: chr2; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 2327301 - 2327496
Alignment:
Q  18 gtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggtt 117  Q
    |||||||||||| || ||||||||||| |||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327301 gtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggtt 2327400  T
Q  118 ccagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 213  Q
    || ||||| || ||||| |||||| | |||| |   ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  2327401 ccggagggtggccatgtcgatttgtcagaaaaatttgaattcaccgtggtgatgaaaaatccattgcaagttcatatttctcatagaatatagatt 2327496  T

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Target: chr2; HSP #8
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 2331017 - 2331210
Alignment:
Q  19 tttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttc 118  Q
    ||||||||||| || ||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2331017 tttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttc 2331116  T
Q  119 cagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagat 212  Q
    | ||||| || |  ||||||||| | || | ||| |||||||||||||| ||||||||||||||||| | |||||||||||| ||||| |||||    
T  2331117 ccgagggtggtcgcgttgatttgtcagagaaacaggaattcactatggtcatgaaaaatccattgcaggctcatatttctccaaggatctagat 2331210  T

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Target: chr2; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 260 - 522
Target Start/End: Original strand, 2321687 - 2321932
Alignment:
Q  260 aaccaccctagattctctgcctgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcatataatgatccc 359  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  2321687 aaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtcggattttgtttcatacaatgatccc 2321786  T
Q  360 ttatgcatacatatatatgccttcacatatgttattgttctttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtca 459  Q
    ||||||||||||  ||||||||| ||               ||||||||||||||||||| ||||||||  |||||  || |||||||||||||||||||    
T  2321787 ttatgcatacattcatatgcctt-ac---------------ttcttatatatcttgtttcttgtataaaataaaac-atgtctgtcattcttgtaagtca 2321869  T
Q  460 agatactttcattgta-aaaatatatgatctttgttgtagtaatattgaagttggtttattttg 522  Q
    ||||||||||| |||| |||| |||||||| ||||| | |||||||  |||||| |||||||||    
T  2321870 agatactttcaatgtataaaaaatatgatc-ttgtttttgtaatatcaaagttgttttattttg 2321932  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 2303983 - 2304046
Alignment:
Q  260 aaccaccctagattctctgcctgagaatgtcataacacagcaggggagtattatatgtggattt 323  Q
    |||||| ||||||||||||| |||||||||||||||||||||  | | ||||||||||||||||    
T  2303983 aaccactctagattctctgcttgagaatgtcataacacagcaaagaaatattatatgtggattt 2304046  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 545
Target Start/End: Original strand, 2321971 - 2322009
Alignment:
Q  507 aagttggtttattttgttaatctgtttggtcttggcggt 545  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  2321971 aagttggtttattttgttaatctgtttggtcttgacggt 2322009  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 373
Target Start/End: Original strand, 2327575 - 2327685
Alignment:
Q  260 aaccaccctagattctctgcctgagaatgtcataacacagcaggggagtattatatgtggatttgtcatat-ggtgggattttgtttcatataatgatcc 358  Q
    ||||| |||||||||||| | ||  ||||||||||||||||   ||| |||||||||| ||||||||| || |||  ||||||| |||||| || |||||    
T  2327575 aaccatcctagattctct-cttggcaatgtcataacacagc---ggaatattatatgtagatttgtcacattggtaagattttgcttcatacaacgatcc 2327670  T
Q  359 cttatgcatacatat 373  Q
     ||||||||||||||    
T  2327671 attatgcatacatat 2327685  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 577
Target Start/End: Original strand, 2322076 - 2322107
Alignment:
Q  546 tatagattatgtttcctccctaaacatctgtg 577  Q
    ||||||||||||||||||||||||||||||||    
T  2322076 tatagattatgtttcctccctaaacatctgtg 2322107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 2331305 - 2331388
Alignment:
Q  290 cataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcatataatgatcccttatgcatacatat 373  Q
    |||| ||||||||||||  |||||  |  ||||||||  |||||| |||||||||||||  ||||||| |||||||||||||||    
T  2331305 catatcacagcaggggaagattatccgcagatttgtccgatggtgtgattttgtttcatcaaatgatcacttatgcatacatat 2331388  T

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Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 41127328 - 41127519
Alignment:
Q  18 gtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggtt 117  Q
    |||||||| ||| || ||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||| ||    
T  41127328 gtttggagttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggtctggaattttaattggaagatt 41127427  T
Q  118 ccagaggg---cgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggat 206  Q
    | ||||||    ||  ||||||||||| |||||| |   ||||||||  |||| |||||||||||| |||||||||||||||||||||||||    
T  41127428 ctagagggagctggttatgttgatttgtcggaaaaaactgaattcaccgtggttatgaaaaatccactgcaagttcatatttctcctaggat 41127519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 26507056 - 26507131
Alignment:
Q  131 atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggat 206  Q
    ||||||||||| | |||| ||| ||||| ||||||||||||||| |||||||| ||| ||| || |||||||||||    
T  26507056 atgttgatttgtcagaaaaacaggaatttactatggtgatgaaatatccattggaagctcaaatatctcctaggat 26507131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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