View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20120_high_23 (Length: 223)
Name: NF20120_high_23
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 43638721 - 43638532
Alignment:
| Q |
18 |
gaatacaggaattgagaannnnnnnnggaagggttcataagtgttgtgtaaagtgagatacaacacacacaagtctcacaagctaatagtttgatcaatt |
117 |
Q |
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| T |
43638721 |
gaatacaggaattgagaattatttttggaagggttcataagtgttgtgtaaagtgagatacaacacacacaagtctcacaagctaatagtttgatcaatt |
43638622 |
T |
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| Q |
118 |
ttaatattttcctcccaagtattttcactcatagttcatccttataaaatgttaccnnnnnnnntagttcatccttataatagttccaac |
207 |
Q |
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| T |
43638621 |
ttaatattttcctcccaagtattttcactcatagttcatccttataaaatgttacaaaaaaaaatagttcatccttataatagttccaac |
43638532 |
T |
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