View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20120_high_3 (Length: 455)
Name: NF20120_high_3
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 2359732 - 2360029
Alignment:
| Q |
17 |
aaatatgtataaacatcattcgcccgagggtttaaattttacaaaaataaaatatgagtacttgtttatttttatagatttcatatt-acaatagatgac |
115 |
Q |
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| T |
2359732 |
aaatatgtataaacatcattcgcccgagggtttaaattttacaaaaataaaatatgagtacttgtttatttttatagatttcatattaacaatagatgac |
2359831 |
T |
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| Q |
116 |
gacaacagcaacaattgtgatctagagattt----nnnnnnnnnnnnnnncagtccatcaaaattgacattaaagagaataaaaaatgagcacggttcta |
211 |
Q |
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| T |
2359832 |
gacaacaacaacaattgtgatctagagatttgaaagaaaaaaaaaaaaaacagttcatcaaaattgatattagagagaataaaaaatgagcacggtttta |
2359931 |
T |
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| Q |
212 |
agctaacaccaccaagttaatttaagtgggtcattgtgatttagagattaattaagaagaaactagtataaaaaacttcaaagcatagaatatgcttg |
309 |
Q |
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| T |
2359932 |
agttaacaccaccaaattaattcaagtggattattgtgatttagagattaattaagaagaaactagtataaaaaacttcaaagcatagaatatccttg |
2360029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 2360117 - 2360159
Alignment:
| Q |
397 |
gtgtgtcatagctatagtgtgtcgaattattttttgtaatact |
439 |
Q |
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| T |
2360117 |
gtgtgtcatagctatagtgtgtcgaattattttttgtaatact |
2360159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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