View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20120_low_11 (Length: 291)
Name: NF20120_low_11
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 43858998 - 43858734
Alignment:
| Q |
12 |
atgaacgataagaaatcaatttcttttttattgattatgatcactggtagttttcattgtgaatacttgttatttatacaaggtaatttacaactaactt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43858998 |
atgaacgataagaaatcaatttcttttttattgattatgatcactgatagttttcattgtgaatacttgttatttatacaaggtaatttacaactaactt |
43858899 |
T |
|
| Q |
112 |
cagaactaacccattacttgatttacaagtaacctaactaataagctaacttgtttcttaacaagcaagttacacaactaactactcaactaattttgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43858898 |
cagaactaacccattacttgatttacaaataacctaattaataagctaacttgtttcttaacaagcaagttacacaactaactactcaactaattttgaa |
43858799 |
T |
|
| Q |
212 |
atacaacacataatacacctcttttaacaagcaaataccattcccagtcttcttctaagttcttca |
277 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43858798 |
atacaacacataatacacctc-tttaacaagcaaataccattcccagtcttcttctaagttcttca |
43858734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 43865554 - 43865443
Alignment:
| Q |
165 |
tttcttaacaagcaagttacacaactaactactcaactaattttgaaatacaacacataatacacctcttttaacaagcaaataccattcccagtcttct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43865554 |
tttcttaacaagcaagttacacaactaactactcaactaattttgaaatacaacacataatacacctc-tttaacaagcaaataccattcccagtcttct |
43865456 |
T |
|
| Q |
265 |
tctaagttcttca |
277 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43865455 |
tctaagttcttca |
43865443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 9225105 - 9225024
Alignment:
| Q |
127 |
acttgatttacaagtaacctaactaataagctaacttgtttcttaacaagcaagttacacaactaactactcaactaatttt |
208 |
Q |
| |
|
||||| |||||||||||||| | ||| || ||||||||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
9225105 |
acttgttttacaagtaacctgattaacaaattaacttgtttcttaacaagcaagatacataactaacttatcaactaatttt |
9225024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University